Plant FIBer expression Database

Lus10007070 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33625 245 / 3e-83 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020442
[exp]
328 / 5e-116 AT4G33625 256 / 1e-87 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G043200
[exp]
256 / 3e-87 AT4G33625 237 / 5e-80 unknown protein
Potri.007G115800
[exp]
226 / 1e-75 AT4G33625 173 / 5e-55 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08507 COPI_assoc COPI associated protein
Representative CDS sequence
>Lus10007070 pacid=23153249 polypeptide=Lus10007070 locus=Lus10007070.g ID=Lus10007070.BGIv1.0 annot-version=v1.0
ATGTCGTCGGAGATGGCTACGAACCAAGACACTGAAGAATTAACGGGAGCAGACGACGCACGGCCGCTCCCTCGACTTCCCTCCCCCGGCCGCCTCACCG
CTAGGCCCGACCCCTTCTTGGTGGTCTGCAGGTGCTTTAGCTTTGTTACCGCAGTCACCGCCATTCTATGTATCGCTGTCAACGTTATCTCCGCCGTTCG
CTCCTTTAAGGACGGATCCGATATATTCGATGGAATCTTCAGGTGCTACGCTGTGGTGATCGCGTTCGTTGTGATTTTGGTGGAGACCGAGTGGGGATTC
ATTCTCAAGTTCTGGAAGGTGCTTGAGTATTGGGCAGGCAGGGGCATGCTGCAGATCTTTGTTGCAGTTATGACGAGAGCTTTCCCAAACTATCAGAACC
ATAAGGAGCTTGTGCTTCTTCAGAATATTGCAAGCTACATGCTCCTTGCTTGTGGTTTGGTCTATATCGTTTCGGGAATCCTATGCATCGGGCTGCTTAA
AAGAGACAGACAGAAAAAGGAGATAACTAGGGAGCAGGCAGCCAAAGATTTGGAGGAATTGGAGCGAAGAAGAGAAGAACTTGAACAGTTACTCGTACCG
GAAAGAGTTTGA
AA sequence
>Lus10007070 pacid=23153249 polypeptide=Lus10007070 locus=Lus10007070.g ID=Lus10007070.BGIv1.0 annot-version=v1.0
MSSEMATNQDTEELTGADDARPLPRLPSPGRLTARPDPFLVVCRCFSFVTAVTAILCIAVNVISAVRSFKDGSDIFDGIFRCYAVVIAFVVILVETEWGF
ILKFWKVLEYWAGRGMLQIFVAVMTRAFPNYQNHKELVLLQNIASYMLLACGLVYIVSGILCIGLLKRDRQKKEITREQAAKDLEELERRREELEQLLVP
ERV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G33625 unknown protein Lus10007070
[exp]
0 1
AT1G12990 beta-1,4-N-acetylglucosaminylt... Lus10000322
[exp]
1.4 0.8736
AT1G18160 Protein kinase superfamily pro... Lus10027247
[exp]
1.4 0.8999
AT2G41990 unknown protein Lus10003341
[exp]
2.4 0.8427
AT2G38090 MYB MYB-R Duplicated homeodomain-like su... Lus10035518
[exp]
3.5 0.8488
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Lus10020413
[exp]
3.9 0.8567
AT3G26935 DHHC-type zinc finger family p... Lus10035177
[exp]
4.5 0.8474
AT4G31050 Biotin/lipoate A/B protein lig... Lus10025664
[exp]
5.5 0.8168
AT3G10910 RING/U-box superfamily protein... Lus10022743
[exp]
6.0 0.8371
AT5G43270 SBP SPL2 squamosa promoter binding prot... Lus10040595
[exp]
6.3 0.8361
AT3G15820 ROD1 REDUCED OLEATE DESATURATION 1,... Lus10025747
[exp]
9.5 0.8197

Lus10007070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.