Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14110 305 / 5e-107 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020444 [exp] 317 / 2e-111 AT2G14110 271 / 1e-93 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G043900 [exp] 309 / 3e-108 AT2G14110 320 / 1e-112 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.017G043700 [exp] 301 / 1e-105 AT2G14110 311 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10007071 pacid=23153254 polypeptide=Lus10007071 locus=Lus10007071.g ID=Lus10007071.BGIv1.0 annot-version=v1.0 ATGGGAGACGACAAGGTTAAGAGTGAAGCGATGCAGATCATCGGAATGTTTCAGATTCTTCCCAAGCTAGTCGTCTTTGATCTCGACTACACTCTCTGGC CTTTCTACTGTGAATGCCGTTCGAAACGGGAAATGCCATCGTTGTATCCTCATGCCAAAGGGATACTGTATGCTCTAAAGGACAAGGGGATTGATTTAGC AATTGCTTCAAGGTCACCCACCCCTGATATTGCCACCACTTTCCTTGACAAACTCAACATCACCTCCATCTTTCCCACCCAGGAAATCTTTTCCAGTTGG ACACATAAAACAGAACATTTTCAGAAGATCCATTCAAGAACTGGTGTGCCATTCAACTCGATGCTCTTCTTCGACGATGAGGACAGGAATATTAACACGG TGTCGAAGATGGGAGTGACAAGCATTCTTGTAGGGGATGGTGTGAATCTTGGAGCATTGAGGGAAGGGCTGACTAAGTTTTCACAAAATACAAATACTGT GGAGAAGAACAAACAAAGGTGGACGAAATTTTCCGAAAAGGCAAATTCGTCCAAGAAAAAGAAGCAGGATGATGATTGA
AA sequence Show only first row Show all	>Lus10007071 pacid=23153254 polypeptide=Lus10007071 locus=Lus10007071.g ID=Lus10007071.BGIv1.0 annot-version=v1.0 MGDDKVKSEAMQIIGMFQILPKLVVFDLDYTLWPFYCECRSKREMPSLYPHAKGILYALKDKGIDLAIASRSPTPDIATTFLDKLNITSIFPTQEIFSSW THKTEHFQKIHSRTGVPFNSMLFFDDEDRNINTVSKMGVTSILVGDGVNLGALREGLTKFSQNTNTVEKNKQRWTKFSEKANSSKKKKQDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10007071 [exp]	0	1
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10021883 [exp]	6.8	0.8101
AT3G52070			unknown protein		Lus10029504 [exp]	10.3	0.8121
AT5G43830			Aluminium induced protein with...		Lus10041181 [exp]	11.0	0.7732
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10038764 [exp]	11.7	0.7411
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	18.1	0.7995
AT1G68330			unknown protein		Lus10041430 [exp]	18.7	0.7028
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	19.3	0.8032
AT5G45275			Major facilitator superfamily ...		Lus10033270 [exp]	22.4	0.7241
AT5G14410			unknown protein		Lus10022295 [exp]	27.1	0.7649
AT1G66930			Protein kinase superfamily pro...		Lus10026759 [exp]	28.4	0.7789

Compare expression of checked genes

Lus10007071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.