Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020445 [exp] 135 / 3e-38 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007072 pacid=23153272 polypeptide=Lus10007072 locus=Lus10007072.g ID=Lus10007072.BGIv1.0 annot-version=v1.0 ATGGAGATTGAAGTCTGTACGTTATCTGACCCAGGAACTAGTTCAAGGTCATTATACGACGAAATATTAATGTACCAGTGGAAACAAACGCATTATTCAA TCACCTTGTCACCAGTCCAGGAAACGAAAGAGTGTGAATTGGCAACTGAAGACTGTTTCCGAGAAACACAAGACTGTGTGATGGCAACTGAAGACTGTTA TCCAGAAACGCCAGAGTTTACGTTGGCAACTCACGACCGTTTGCTGGAAACTGGTGAATCTCCCACTGATCCCTTTTGTCGGAAAGTTTACATCGCCAGG AGCACCTAG
AA sequence Show only first row Show all	>Lus10007072 pacid=23153272 polypeptide=Lus10007072 locus=Lus10007072.g ID=Lus10007072.BGIv1.0 annot-version=v1.0 MEIEVCTLSDPGTSSRSLYDEILMYQWKQTHYSITLSPVQETKECELATEDCFRETQDCVMATEDCYPETPEFTLATHDRLLETGESPTDPFCRKVYIAR ST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007072 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	9.2	0.6264
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	22.7	0.6412
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10014713 [exp]	42.3	0.5736
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10031139 [exp]	46.9	0.5904
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	56.9	0.5938
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	67.8	0.5630
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	67.9	0.5648
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10040679 [exp]	71.4	0.5815
AT1G78930			Mitochondrial transcription te...		Lus10035714 [exp]	85.7	0.6010
					Lus10024688 [exp]	87.4	0.5557

Compare expression of checked genes

Lus10007072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.