Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 69 / 1e-13 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 61 / 1e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 54 / 2e-08 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 52 / 7e-08 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 49 / 9e-07 Concanavalin A-like lectin protein kinase family protein (.1) AT3G16530 45 / 1e-05 Legume lectin family protein (.1) AT3G15356 43 / 9e-05 Legume lectin family protein (.1) AT4G29050 42 / 0.0002 Concanavalin A-like lectin protein kinase family protein (.1) AT5G42120 40 / 0.0009 Concanavalin A-like lectin protein kinase family protein (.1) AT1G53070 40 / 0.0009 Legume lectin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020446 [exp] 240 / 6e-75 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 174 / 1e-50 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 170 / 1e-48 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007076 [exp] 154 / 9e-47 AT5G10530 79 / 6e-17 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 80 / 3e-17 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 73 / 1e-14 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 72 / 1e-14 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 72 / 1e-14 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 72 / 2e-14 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 140 / 2e-38 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 140 / 2e-38 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 132 / 2e-35 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 127 / 8e-34 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 126 / 3e-33 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 115 / 1e-29 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 103 / 4e-25 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 94 / 6e-22 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 91 / 9e-21 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 89 / 2e-20 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10007073 pacid=23153268 polypeptide=Lus10007073 locus=Lus10007073.g ID=Lus10007073.BGIv1.0 annot-version=v1.0 ATGAAATATAGAAAAGAAAATACGTTGACTCGTGAGAATTACAGTCAACAATCACAAAGTAAAGCAGCAACGACTAACGAGTGCAGCAGCCAAGCTCTTG AAAGTTCAATCCAAGCAGCAGCTTGTTTACTGGTTTACAGACTGCCATCTTCAATCCACTCCGAAATGCTTCCTCTTGGCAATCCCAACCATGGCTGCTC CCTCACCAATCCATTCCTCTTCATCATCACAACCGCCATCCTCCTCCTCTGCTCTCCACCGCCGTCCTCCTCCGCCTTAAAATTCAACTTCACATCCTTC ACCGGCGACGACACCAACATCACCTACGAAGAAGCCTTCCCAGCAGACAACTCCATCCAGCTCACCCGAAACCTCTTGGGCTCAACCCTAAGCTCCAGCG CCGGCCGCGCCACTTACACCTCCCCTTTACCCCTATGGGACCCTATCTCCCGCAACCTAACCGATTTCCAAACCCATTTCGTCTTCAGCATCTTCTCTCA GTACAAAGACGGCTACGGCGACGGCTTCGCCTTCTTCTTATCCCCCTTCGATTCCAAGCTCCCTTCCGCCAGCCCCGGCGGCACTCTCGGACTCACCTCC TCCGCCAGTCGCGCCGTCAACGCCTCCGCCAACCACTTCATCGCCGTCGAATTCGACATCTTCAGCAACAACTATTGA
AA sequence Show only first row Show all	>Lus10007073 pacid=23153268 polypeptide=Lus10007073 locus=Lus10007073.g ID=Lus10007073.BGIv1.0 annot-version=v1.0 MKYRKENTLTRENYSQQSQSKAATTNECSSQALESSIQAAACLLVYRLPSSIHSEMLPLGNPNHGCSLTNPFLFIITTAILLLCSPPPSSSALKFNFTSF TGDDTNITYEEAFPADNSIQLTRNLLGSTLSSSAGRATYTSPLPLWDPISRNLTDFQTHFVFSIFSQYKDGYGDGFAFFLSPFDSKLPSASPGGTLGLTS SASRAVNASANHFIAVEFDIFSNNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	0	1
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	1.0	0.9469
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	2.0	0.9418
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	4.9	0.8913
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015888 [exp]	5.7	0.8735
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	6.2	0.9144
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10016042 [exp]	6.5	0.8678
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	7.3	0.8815
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	8.8	0.8852
					Lus10019165 [exp]	10.7	0.8897
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	12.0	0.8867

Compare expression of checked genes

Lus10007073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.