Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 426 / 3e-143 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 389 / 2e-128 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 337 / 4e-108 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 332 / 3e-106 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 323 / 3e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 322 / 2e-102 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 316 / 3e-100 RLK receptor lectin kinase (.1) AT5G06740 314 / 1e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 300 / 4e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01550 299 / 1e-93 LECRKA4.2 lectin receptor kinase a4.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020446 [exp] 944 / 0 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 556 / 0 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 553 / 0 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 474 / 5e-161 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 457 / 4e-159 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 425 / 8e-143 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 406 / 9e-135 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 402 / 4e-134 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 402 / 2e-133 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283204 [exp] 511 / 2e-176 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 513 / 3e-176 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 512 / 5e-176 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 512 / 5e-176 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 506 / 5e-174 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 502 / 2e-173 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 501 / 3e-173 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 504 / 4e-173 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 502 / 7e-172 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 471 / 3e-160 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10007074 pacid=23153219 polypeptide=Lus10007074 locus=Lus10007074.g ID=Lus10007074.BGIv1.0 annot-version=v1.0 ATGGGCGGGAGGAGGAGCAAGGCTTGGATTTCTTACGATTCCGCCACCCGCAACTTGAGCGTGGCGGTTTCTGCGTTCGTTAGGGATTTTCCGATTGTCC AGAGACTCAGCCACATAATCGATTTAAGGGAGTTCTTACCCGAACGGGTCAGGATCGGGTTCTCCGGTTCGACCGGTGAGCAGGTCGCGATTCACCGGAT TCATTCTTGGGATTTCGTTTCCACGTTGGAAGAAGCAGCAGTTGGTAATCGGACCGGAGAAAGGAGTATTGATCAGAACAGGGGAAGGAAACGAAACAGA GTGGCTCTGTTTTCTGGGTTGGCAATTTTGATTTGTTTCGGTGTTGTTTTCAGGAAAAGGATTGTGGGTTTAATAGGGAGAAACTGGGATGATTTTGAGA TGGATGAATCCATGTTTGAGAAAGGAGCTGGGCAGCCGAGCAAGTTCAGTTTCAAGGAATTGGCGAGAGCTACTGACAACTTCAACGAACGGGATAACAA GCTTGGAGAAGGAGGGTTTGGTAAGGTGTACAAGGGTCAAATCGGGAAATTACTCCTCGCTGTAAAGAGGGTGTCGTCGAGGAAATCAGGACAAGGGATG AAGGAATTCGCGGCGGAGGTGAAGATCATCAGCAGATTACGACACAGGAATCTGGTTCAACTCATCGGGTGGTGCAGCGAGAAAAAGGAGCTCTTGCTTG TGTACGAATTCCTCCCAAACGGAAGCCTTGATTCCCACCTCTTCCAATTACAAAAACAAGAAAGCTGGCTGTTGAATTGGGAAATTAGGTATAAGATTGC CAAAGGGTTGGCGTCAGGACTGCTCTACTTGCACGAGGAATGGGAGCAGTGCGTGGTTCACCGAGACATTAAGTCGAGTAACGTTATGCTGGATTCGAAT TTCAACGCCAAGCTCGGCGATTTTGGTCTCGCTAGGCTGGTGGATCACGAAAAGGGTTCGCAGACTACGCTTCTGGCTGGGACGATGGGGTATCTCGCTC CTGAATGTGTCGTAACGGGAAAGGCGAGTCGAGAGACTGACGTTTACAGCTTCGGAGTTGTGCTTCTAGAAATCGGTATGGGGAGAAGGCCCGCGGTTAC AGTGAATGGGCAAGAGGAAGTTGTTGTGCATTTGGTTGAGTGGGGTTGGGACCTCTATGGAGATGGAACACTGATGATCGAAGGTCCTGATCCTAAGCTG GATAGGGAATATGATTTGGCGGAAATGGAGAGGCTGTTGATGGTCGGGTTGTGGTGTGCGCACCCGGATTCGAGCTCGAGACCTTCGGTTAGGCAAGCGC TTCAATTGCTCAACTTTGAAGCTCCATTGCCGGTACTTCCGTTAAACATGCCGGTGGCGACTTACGGAGGCTCGGACCATATGACGGTGGGGTCATCCGC TCTTTCAACGTGGACGACAATGGCTGATGCTGACTTGCCGAGACGTCAGGTTTCTTGTAACTTTAACGCGTTGGATGGGAAAGCTCCTTCACCACTTGGA AAGTTCAGTAGTGATGTAGTCACTTTCTAG
AA sequence Show only first row Show all	>Lus10007074 pacid=23153219 polypeptide=Lus10007074 locus=Lus10007074.g ID=Lus10007074.BGIv1.0 annot-version=v1.0 MGGRRSKAWISYDSATRNLSVAVSAFVRDFPIVQRLSHIIDLREFLPERVRIGFSGSTGEQVAIHRIHSWDFVSTLEEAAVGNRTGERSIDQNRGRKRNR VALFSGLAILICFGVVFRKRIVGLIGRNWDDFEMDESMFEKGAGQPSKFSFKELARATDNFNERDNKLGEGGFGKVYKGQIGKLLLAVKRVSSRKSGQGM KEFAAEVKIISRLRHRNLVQLIGWCSEKKELLLVYEFLPNGSLDSHLFQLQKQESWLLNWEIRYKIAKGLASGLLYLHEEWEQCVVHRDIKSSNVMLDSN FNAKLGDFGLARLVDHEKGSQTTLLAGTMGYLAPECVVTGKASRETDVYSFGVVLLEIGMGRRPAVTVNGQEEVVVHLVEWGWDLYGDGTLMIEGPDPKL DREYDLAEMERLLMVGLWCAHPDSSSRPSVRQALQLLNFEAPLPVLPLNMPVATYGGSDHMTVGSSALSTWTTMADADLPRRQVSCNFNALDGKAPSPLG KFSSDVVTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10007074 [exp]	0	1
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10025118 [exp]	1.0	0.8991
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	3.9	0.8817
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	4.5	0.8831
AT3G13130			unknown protein		Lus10006387 [exp]	4.9	0.8695
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	8.0	0.8791
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	9.5	0.8689
					Lus10016909 [exp]	12.6	0.8301
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002175 [exp]	17.7	0.8678
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10023837 [exp]	18.0	0.8348
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	18.2	0.8676

Compare expression of checked genes

Lus10007074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.