Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 369 / 6e-123 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 363 / 3e-120 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 301 / 2e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 300 / 2e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 290 / 2e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 287 / 5e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 281 / 3e-88 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 275 / 1e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 275 / 1e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 274 / 5e-86 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020452 [exp] 459 / 2e-157 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 456 / 4e-154 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 448 / 9e-153 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 434 / 2e-150 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 397 / 6e-133 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 374 / 4e-124 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 369 / 1e-122 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 363 / 2e-120 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 361 / 1e-119 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 433 / 5e-147 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 433 / 5e-147 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 431 / 3e-146 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 429 / 5e-146 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 427 / 1e-145 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 426 / 1e-145 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 428 / 3e-145 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 427 / 6e-145 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 415 / 1e-141 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 402 / 4e-135 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007075 pacid=23153234 polypeptide=Lus10007075 locus=Lus10007075.g ID=Lus10007075.BGIv1.0 annot-version=v1.0 ATGGATGAGATATTGGGGAAAGAAGCAGGGCCAAGGAAGTTTACTTTCAAGGAATTGGCTAAAGCTACTAACAATTTCAGCGACTCGGAGAACAAGCTTG GAGAAGGTGGGTTCGGTGGGGTTTACAGAGGGTTTATCAACGACAAGAACGAGTACATTGCAGTGAAGAGGGTTTCGAAGAATTCGAAACAAGGGATCAA GGAATTCGCGGCAGAGGTGAAGATCATCAGCCGTTTGCGACACCGGAACTTGGTTCAACTGATTGGATGGTGTTACGACAAAATGGAGCTGCTCCTTGTT TACGAGTTTCTACCAAACGGCAGCCTTGATATGCATCTGTTTTGGAAGAGCAACGACATCACCAATTCGTTGTTGAGATGGGAAACGAGGTATAAGATCG CGAAAGGTTTAGCATCGGCATTGCTGTATTTGCACGAAGAGTGGGAGCAATGCGTGGTTCACCGAGACATAAAGTCGAGCAACGTTATGTTGGATTCGAA TTTCAACGTCAAATTGGGCGATTTCGGCCTGGCAAGGCTGGTGGATCATGACAAAGGCTCCCAGACCACTCGTATGGCCGGGACGATGGGCTATTTGGCT CCCGAGTGCGCTACTACGGGGAAGGCGAACCGGGAGTCCGATATTTACAGCTTCGGAGTTGTGCTTCTCGAGATTGCCACGGGGAGAAGGCCGGCAGTTG TGGAAGAGCAATACGCTGTGCATTTGACTCACTGGGTTTGGGACCTCTATCGAGATGGGAGGTTGATTGTGGAAGCTGCTGATGCTAAGCTGAACGGTGA TTTCGATGAGCGGGAGATGGAGAGGTTGATGGTGATTGGGTTGAGCTGCGCTCACCCGAATGCGAAATTTAGGCCTTCAATTAGGCAAGCTCTTCAAGTG CTGAACTTCGAGGCTGCATTGCCTATGCTTCCGCTTAGTAGACCTATGGCGAGTTACATTTCCACTTTGTCGATGGCTGAATCATGTACTAATTTGTCGT CGTCCTCGACAAAGGCTGCTTCTAGCTTCATTGATTCATCATCTGCGGATGGTGAGTCCAAAAGTTACTTTTCTTGTGAGGTTGCGCCGTCGAGGTCGGA CGGATACTCCGTTGATACTGCCAACGTGGCCGCTACATTTTGA
AA sequence Show only first row Show all	>Lus10007075 pacid=23153234 polypeptide=Lus10007075 locus=Lus10007075.g ID=Lus10007075.BGIv1.0 annot-version=v1.0 MDEILGKEAGPRKFTFKELAKATNNFSDSENKLGEGGFGGVYRGFINDKNEYIAVKRVSKNSKQGIKEFAAEVKIISRLRHRNLVQLIGWCYDKMELLLV YEFLPNGSLDMHLFWKSNDITNSLLRWETRYKIAKGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLVDHDKGSQTTRMAGTMGYLA PECATTGKANRESDIYSFGVVLLEIATGRRPAVVEEQYAVHLTHWVWDLYRDGRLIVEAADAKLNGDFDEREMERLMVIGLSCAHPNAKFRPSIRQALQV LNFEAALPMLPLSRPMASYISTLSMAESCTNLSSSSTKAASSFIDSSSADGESKSYFSCEVAPSRSDGYSVDTANVAATF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007076 [exp]	1.0	0.8949
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	1.4	0.8851
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	2.8	0.8699
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	6.0	0.8530
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10036384 [exp]	7.1	0.8427
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10015739 [exp]	9.2	0.8556
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	11.7	0.8814
AT4G38100			unknown protein		Lus10002647 [exp]	12.0	0.8538
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	12.8	0.8493
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10018692 [exp]	13.2	0.8341

Compare expression of checked genes

Lus10007075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.