Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 79 / 1e-16 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 70 / 1e-13 Concanavalin A-like lectin protein kinase family protein (.1) AT3G16530 67 / 3e-13 Legume lectin family protein (.1) AT5G65600 62 / 6e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 60 / 3e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 59 / 5e-10 RLK receptor lectin kinase (.1) AT5G03140 59 / 6e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT1G53080 58 / 6e-10 Legume lectin family protein (.1) AT3G55550 58 / 9e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT3G15356 56 / 3e-09 Legume lectin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007077 [exp] 250 / 9e-78 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 245 / 5e-77 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 223 / 3e-68 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007073 [exp] 174 / 3e-54 AT5G10530 77 / 3e-16 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014651 [exp] 95 / 8e-23 AT2G37710 96 / 3e-21 receptor lectin kinase (.1) Lus10029555 [exp] 96 / 2e-22 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 96 / 2e-22 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014652 [exp] 94 / 3e-22 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033776 [exp] 92 / 8e-22 AT2G37710 91 / 8e-20 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 193 / 2e-57 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 193 / 2e-57 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 190 / 2e-56 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 184 / 3e-54 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 176 / 4e-51 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 171 / 2e-49 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 154 / 1e-43 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 136 / 6e-37 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 134 / 3e-36 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 108 / 4e-27 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10007076 pacid=23153228 polypeptide=Lus10007076 locus=Lus10007076.g ID=Lus10007076.BGIv1.0 annot-version=v1.0 ATGGTTCTAACGCTCACATTTCTCATCATCGCCGCCATCTTCATCTCCCCTTTCACCACCACCACCGCCGCCGCCTTATCCTTCAACTTCACAAGCTTCA CAAACGACAACCGCAACATCACTTACGATCAGGCCTTCCCAGCAGACAACTCCATCCAGCTCACCCGAAACCTCCTCACCTCATCAGATCCCAACATCAC CGCCTTCGGCCGCGCCACTTACTCCTCCGCCTTACCCCTCTGGGATCCAATTTCCCGAAACCTCACCCAATTCCAAACTCACTTCACCTTCAGCATCTTC TCCCAATTCCAAACTGGCTACGGCGACGGCCTCGCCTTCTTCCTCGCCCCTAAATCCTCCAATCTCCCTCCTAACCTCACCAACACCAGTTCCATGGGAC TCACCCAAGACCTCCAGCTGTTAAACACCTCCGCTAACCGATTCGTCGCCGTCGAATTTGACATCTTCAGCAACTACTTCGATCCGCAAGTCACACACGT CGGAATCGACATCAATTCCATGGAGTCCGTAGTGACTACACCTTGGGGAGCAGACGTAATCGGCGGGCGTAATCGGCGGGCGGAGAACCGACGCTTGGAT TACTTACAACCCCACCACCAAGAACTTAACCGTAGCCGTAACCGGAATTGTTCGGAACGTTTCGGTAATTCAGAGGCTTAG
AA sequence Show only first row Show all	>Lus10007076 pacid=23153228 polypeptide=Lus10007076 locus=Lus10007076.g ID=Lus10007076.BGIv1.0 annot-version=v1.0 MVLTLTFLIIAAIFISPFTTTTAAALSFNFTSFTNDNRNITYDQAFPADNSIQLTRNLLTSSDPNITAFGRATYSSALPLWDPISRNLTQFQTHFTFSIF SQFQTGYGDGLAFFLAPKSSNLPPNLTNTSSMGLTQDLQLLNTSANRFVAVEFDIFSNYFDPQVTHVGIDINSMESVVTTPWGADVIGGRNRRAENRRLD YLQPHHQELNRSRNRNCSERFGNSEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10007076 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	1.0	0.8949
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	2.0	0.8705
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	3.5	0.8825
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	5.1	0.8832
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	7.5	0.8551
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	7.5	0.8377
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	7.7	0.8687
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10015739 [exp]	8.4	0.8634
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	10.7	0.8642
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	12.0	0.8542

Compare expression of checked genes

Lus10007076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.