Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 476 / 1e-157 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 419 / 2e-135 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 371 / 8e-117 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 343 / 1e-106 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 326 / 8e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 326 / 1e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 325 / 1e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 315 / 1e-95 RLK receptor lectin kinase (.1) AT5G03140 314 / 3e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 305 / 3e-92 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020452 [exp] 1210 / 0 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 765 / 0 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 524 / 4e-178 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 530 / 1e-177 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 481 / 1e-158 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 473 / 2e-156 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 471 / 2e-155 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 465 / 3e-152 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 463 / 2e-151 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262866 [exp] 692 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 689 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 689 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 689 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 669 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 660 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 646 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 621 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 585 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 573 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10007077 pacid=23153226 polypeptide=Lus10007077 locus=Lus10007077.g ID=Lus10007077.BGIv1.0 annot-version=v1.0 ATGGCGTCCAAGCTCTCCTCGACTCTTCTTCTAATCATCATCAGTACTGTCATCATCCCATCACCATCGGCCGGAGTAACATTCAACTTCACAACCTTCA AAAACGACAACCAGAACATCACTTACGAGGAAGCATTCCCAGCAGACAACGCAATTCAGCTCACCAAAAACCTCCTTGACTCCGATCTCAAATTCAGCTT CGGCCGCGCCACTTACCGTTCCCCTCTACCCCTCTGGGACCCCGTCTCCCGAAACCTCACCGATTTCCATACCCATTTCACCTTCAGCATCTTTTCTCAG TTCCAAACAGGTTACGGCGACGGCCTCGCCTTCTTCCTCGCACCCAAGGGCTCCAAGCTCCCAACTAACCTGACAGAAGGAGGCTCCATGGGCCTCACCA GAGACCTCCAGCAGTTGAACACGACCGAGAATCGATTCGTGGCTGTGGAATTCGACATCTTCAGGAATCCGTGGGATCCTGACGGGAAACACGTAGGGAT AGACTTGGATTCCATGGCTTCTGTCAGGAATATTACCTGGGGCGGTGATATAATCAGTGGGAGAAAGAGCGAGGCGTGGATCCAGTATGACTCGAGTGCG TTTAACTTGAGCGTTGTTGTGACAGGGTTCGTGGGCGCTGTGATGTTGAATCAGAGTTTGAGCCAGATTGTCGACCTGAGGGATTACCTTCCCAGTGAGG TCACTTTTGGGTTCTCGGGGTCCACTGGGAATCAGAGCGCAATTCACAAGGTTCACACTTGGGAATTCAAGTCCACTCTTGAATTCTCAGGTGAGAAAAA CAGGGGAAGCCGTAAAAGCAGAGCTCCTGTGTTTATCGGTTCGATCGGTATGGTTGTTGGGTTGTTGGTGTTGGTTTCTTTTCTTATCCTTTACAGGAAA AAGATATTTGGCTGCAGAAATGCAAAGTATGGTGGTCGTAGTCGTGGTCGTTGTGATGTTGATGATGAAGAGCAACACAAATTGGATCGTCAAATAATGG ACGAAGTTTTGGCGGATGGAGCGGAAGGAGGACTAAGGAAGTTCACATTCCAAGAACTGGCTCGAGCTACGAACAATTTCAATGATGAAGGTAACAAGCT TGGAGAAGGAGGGTTTGGAGGGGTTTACAGAGGGTATCTTAAGGACAAGAAGGACGAAGTTGCGGTGAAGAGGGTGTCGAAGAAATCGAGGCAAGGGATT CGAGAATTCGCTGCAGAGGTGAAGATCATCAGTCGGTTGAGGCACCGGAATTTGGTCAGGCTAATCGGATGGTGTCACGAGAAGGATGAGTTGCTCCTAG TGTACGAGTTCCTAACTAACGGCAGCCTCGATTTCCACCTCTTCAAGCAAAAAGATGTAAACTTGTTATTGAATTGGGAAACTAGGTACAAAATTGCTAA AGGGTTGGCATCCGGGTTGCTCTACTTGCATGAGGAGTGGGAGCAATGTGTGGTACATAGAGACATCAAGTCGAGCAATGTTATGTTAGACTCGAATTTC AGTGCCAAGTTAGGGGATTTTGGACTGGCCAGGTTAGTCGATCATGACAAGGGCTCACAAACTACAATGCTGGCCGGAACGATCGGATATGTAGCTCCGG AATCCGCCATGACGGGGAAGGCAAATAAGGAGACAGATGTCTACAGTTTCGGAGTTGTGGCTTTAGAGATTGCGACAGGGAGAAACCCAGCCGTTGTGGT GAAACTTGATGGGAACCAATGTTTTGTGCATTTGGTTAAATGGGTGTGGGACCTGCACGGTGCAGGCACTATGCTAGAAGAAGGTCCTGAGTCCGGACTA AGCGGGAAATTTGCGGAAGAGGAAATGGAAAGATTGATGATAATCGGGTTGTGCTGCTGCCACCCGGATCCGAAGTTGAGGCTTTCGATAAGGCAAGCGC TACAAGTTTTGAACTTCGAGGCGCCATTGCCGATTCTCCCGATGAATATGCCTGTGGCTACTTTTGTTTCGGCATCGTTTTTGTCAGTGGATGTAACTAC TTCCACATCATCGTCGTCGGGAGTGGATATTACTCGGTCAATTGACATAACCAATACAATGGCGAGGACTGAAGCGGGGCAATCTCCACTCGAGGCAATC TCCACGACTCGACACAGTAGCCACCGCAAACCCGAAAGGAAGAAACCAGCCGCATCAACTCCAAATCGATCATTCTCGGCGGCAGCAGCTACATCATCGG AGAAGCTAACGATGTTCCGAGACGTCTCTTCCCATTGCGTCACAAAGTTGTGGCAACGGCCTTCCCTTCCCAAATTCAAATGCTGCAAATCCAATCCGAT ACCCACTCTGCCACAACTCCAGCTAACTCATTATCACCACCCTTGTCAAACCAGCTCCTCCACATTTTCCCACCAAATTCCTACCTTCTCGACCCTGAAC ATTCAGGGATACTCCCGCTGGGTAGGCCAGAAATACAGCCGGCCCCAAAACCAAACCACACGAAAATTGATTGGATTCTCCAAGGGAATGATGTTCCGGA CTGGAGGAAGTATTAGTCGCATGTCAGAGACCACTCGGTACGACCTGTTACATCATGAAGATGGTCCCGGAAACTGGGGGTACCTCCCTCTCTGGGAAGC GAATCATCCATTCCCACGCGATCGATGCTATTAA
AA sequence Show only first row Show all	>Lus10007077 pacid=23153226 polypeptide=Lus10007077 locus=Lus10007077.g ID=Lus10007077.BGIv1.0 annot-version=v1.0 MASKLSSTLLLIIISTVIIPSPSAGVTFNFTTFKNDNQNITYEEAFPADNAIQLTKNLLDSDLKFSFGRATYRSPLPLWDPVSRNLTDFHTHFTFSIFSQ FQTGYGDGLAFFLAPKGSKLPTNLTEGGSMGLTRDLQQLNTTENRFVAVEFDIFRNPWDPDGKHVGIDLDSMASVRNITWGGDIISGRKSEAWIQYDSSA FNLSVVVTGFVGAVMLNQSLSQIVDLRDYLPSEVTFGFSGSTGNQSAIHKVHTWEFKSTLEFSGEKNRGSRKSRAPVFIGSIGMVVGLLVLVSFLILYRK KIFGCRNAKYGGRSRGRCDVDDEEQHKLDRQIMDEVLADGAEGGLRKFTFQELARATNNFNDEGNKLGEGGFGGVYRGYLKDKKDEVAVKRVSKKSRQGI REFAAEVKIISRLRHRNLVRLIGWCHEKDELLLVYEFLTNGSLDFHLFKQKDVNLLLNWETRYKIAKGLASGLLYLHEEWEQCVVHRDIKSSNVMLDSNF SAKLGDFGLARLVDHDKGSQTTMLAGTIGYVAPESAMTGKANKETDVYSFGVVALEIATGRNPAVVVKLDGNQCFVHLVKWVWDLHGAGTMLEEGPESGL SGKFAEEEMERLMIIGLCCCHPDPKLRLSIRQALQVLNFEAPLPILPMNMPVATFVSASFLSVDVTTSTSSSSGVDITRSIDITNTMARTEAGQSPLEAI STTRHSSHRKPERKKPAASTPNRSFSAAAATSSEKLTMFRDVSSHCVTKLWQRPSLPKFKCCKSNPIPTLPQLQLTHYHHPCQTSSSTFSHQIPTFSTLN IQGYSRWVGQKYSRPQNQTTRKLIGFSKGMMFRTGGSISRMSETTRYDLLHHEDGPGNWGYLPLWEANHPFPRDRCY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	0	1
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	1.0	0.9718
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	2.0	0.9432
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	2.4	0.9177
					Lus10012088 [exp]	2.8	0.8703
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	4.0	0.8879
AT1G71760			unknown protein		Lus10004010 [exp]	5.5	0.8846
AT1G78160		APUM7	pumilio 7 (.1)		Lus10041139 [exp]	5.5	0.8680
AT4G15790			unknown protein		Lus10004794 [exp]	14.7	0.8468
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	20.0	0.8772
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	20.8	0.8540

Compare expression of checked genes

Lus10007077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.