Plant FIBer expression Database

Lus10007078 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020455
[exp]
246 / 4e-81 ND 42 / 8e-04
Lus10007080
[exp]
210 / 1e-69 ND /
Lus10007081
[exp]
115 / 8e-31 AT5G55150 45 / 6e-05 Protein of unknown function (DUF295) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G078900
[exp]
102 / 1e-26 AT5G24040 52 / 1e-07 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2)
PFAM info
Representative CDS sequence
>Lus10007078 pacid=23153271 polypeptide=Lus10007078 locus=Lus10007078.g ID=Lus10007078.BGIv1.0 annot-version=v1.0
ATGGTCCTGACAGGCTTACCCGTTCCAACTTTTGGCTATCATCGAATCGGGATGCAGTCGGACCATTCATGGAAGAAGCACGATTCCGCTATCGTAGATC
CCAACGGTACTTCTGACAAATCGAATGGAGGAGGACGACACATGATCCTCTGTCATGGGGTTTGGTTGAGGCGGAAGTTGGACGCTCTGAGTCTGCAGGG
GACTCTGGCGGTTATCGAGGAAGACAACAAAGATGGATTCAGAATTGGTGCCGTGGGTAAACAGGGTAGAGCTTTTCCTTGTGCTTCGTTTCAGCAGTTT
AGGGAGTGTTTGGTGGAATCTGGAGGAGAAGTTCTTCTGGTTTTCTTGGTTTTTAAGAAATGTATGGAGAAGGCGGATGAAGTTGAAGTTTACAGTCTCG
AAGTAGGGAAGCTGGAGTGGGTGCGGAGACAGAGCATTGTTCTTTGGAACCAACTGTTGTGTATCTGCTGCTGCTCCATGGGAAGTGGGAGTAGCATGCA
GGAGGAATTGTGTCTACTTCAAAGCCAATTATTTTGA
AA sequence
>Lus10007078 pacid=23153271 polypeptide=Lus10007078 locus=Lus10007078.g ID=Lus10007078.BGIv1.0 annot-version=v1.0
MVLTGLPVPTFGYHRIGMQSDHSWKKHDSAIVDPNGTSDKSNGGGRHMILCHGVWLRRKLDALSLQGTLAVIEEDNKDGFRIGAVGKQGRAFPCASFQQF
RECLVESGGEVLLVFLVFKKCMEKADEVEVYSLEVGKLEWVRRQSIVLWNQLLCICCCSMGSGSSMQEELCLLQSQLF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10007078
[exp]
0 1
AT2G23560 ATMES7 ARABIDOPSIS THALIANA METHYL ES... Lus10000840
[exp]
11.2 0.7444
AT5G37840 unknown protein Lus10043472
[exp]
13.3 0.7619
AT1G01490 Heavy metal transport/detoxifi... Lus10024672
[exp]
16.7 0.7212
AT4G31540 ATEXO70G1 exocyst subunit exo70 family p... Lus10027347
[exp]
21.6 0.7613
AT5G25610 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, ... Lus10024706
[exp]
25.7 0.7196
AT3G15810 Protein of unknown function (D... Lus10006656
[exp]
55.1 0.6595
AT3G18150 RNI-like superfamily protein (... Lus10014142
[exp]
65.4 0.7184
AT3G10330 Cyclin-like family protein (.1... Lus10016260
[exp]
87.6 0.6663
AT1G44970 Peroxidase superfamily protein... Lus10033193
[exp]
150.9 0.6785
AT3G49030 FBD, F-box and Leucine Rich Re... Lus10029003
[exp]
159.9 0.6822

Lus10007078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.