Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 338 / 3e-112 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 312 / 4e-102 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 270 / 6e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 253 / 6e-79 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 246 / 2e-76 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 244 / 1e-75 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 243 / 1e-75 RLK receptor lectin kinase (.1) AT3G55550 242 / 6e-75 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 240 / 1e-74 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 238 / 1e-73 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020456 [exp] 563 / 0 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 369 / 1e-123 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 338 / 3e-112 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 326 / 4e-111 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 337 / 6e-111 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 333 / 7e-111 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 329 / 2e-110 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 332 / 1e-109 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 328 / 8e-108 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004200 [exp] 384 / 7e-130 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 366 / 5e-123 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 363 / 1e-122 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 365 / 2e-122 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 365 / 3e-122 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 365 / 3e-122 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 362 / 1e-121 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 362 / 3e-121 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 360 / 3e-120 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 360 / 3e-120 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10007079 pacid=23153218 polypeptide=Lus10007079 locus=Lus10007079.g ID=Lus10007079.BGIv1.0 annot-version=v1.0 ATGACTATAAGCAGATTGCGCCATAGGAATCTTGTTCAGCTGGTGGGTTATAGCCACAAGAAGGGAAGTTTCGTGCTTGTTTACGAGTTCATGCACAACG GAAGTCTGGATGCACATCTGTTCGGAAAGAAGAAAAAAGTGGCTCTGCTCGAATGGAGCATCAGGTTCAAAATAGCCCAAGGTTTGGCTTCCGCGTTGCT CTACCTCCACGAGGAGTGGGAGCAGTGCGTTGTCCACCGTGACATAAAGTCCAGCAACGTGATGCTGGATTCCAATTTTAACGCTAAGCTTGGCGACTTT GGGCTCGCCAAGCTTATCGACCACAATCTCGGGTCTCAGACAACGGTTGTGGCGGGGACCATGGGGTACATGGCTCCGGAGTATCTTATGACGAGCAAGG CGAGCAAAGAGTCGGACGTTTACAGTTTCGGAGTGGTGGCGTTGGAGATTGCGTGCGGGAGGAAAGCAGTGGAGCACAGGAAGGAAGAGTCGAAGATCAT TTTGGTGAATTGGGTGTGGGAGCTTTACGGACAAGGGAAGATTGTCGAAGCGGCTGATGAAGCGCTTGTGGCCGAGTTTGAGGAGGATGAGATTGTGCGT CTGATGACGGTCGGATTGTGGTGTGCTCATCCGGATCATACTCTAAGACCTTCGATAAGGCAAGCGATTCAGGTGCTGAATTTTGAAGCCGGGTTGCCTA GTCTTCCGCCCAAGATGCCGGTACCTTCTTTCTATGCTCCGCGAATTGAGAACTTCAATTCCTTATCGACGTACACTGTTTCGAGTGAAGTGACTAGGGA AATGTCTCCGTGTTCCAGTAGCTCTACCCAGAATTTGATTTATAGTAGTACTGTTAGCTCAACCAACTCATGA
AA sequence Show only first row Show all	>Lus10007079 pacid=23153218 polypeptide=Lus10007079 locus=Lus10007079.g ID=Lus10007079.BGIv1.0 annot-version=v1.0 MTISRLRHRNLVQLVGYSHKKGSFVLVYEFMHNGSLDAHLFGKKKKVALLEWSIRFKIAQGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNAKLGDF GLAKLIDHNLGSQTTVVAGTMGYMAPEYLMTSKASKESDVYSFGVVALEIACGRKAVEHRKEESKIILVNWVWELYGQGKIVEAADEALVAEFEEDEIVR LMTVGLWCAHPDHTLRPSIRQAIQVLNFEAGLPSLPPKMPVPSFYAPRIENFNSLSTYTVSSEVTREMSPCSSSSTQNLIYSSTVSSTNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10007079 [exp]	0	1
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Lus10037781 [exp]	2.0	0.9652
AT2G15220			Plant basic secretory protein ...		Lus10019807 [exp]	2.6	0.9569
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Lus10017063 [exp]	8.8	0.9729
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10010570 [exp]	9.4	0.9597
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	14.3	0.9636
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	15.3	0.9584
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	16.1	0.9400
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	16.3	0.9494
AT1G30700			FAD-binding Berberine family p...		Lus10023375 [exp]	17.4	0.9381
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	20.1	0.9590

Compare expression of checked genes

Lus10007079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.