Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020455 [exp] 314 / 5e-107 ND 42 / 8e-04 Lus10007078 [exp] 207 / 1e-68 ND / Lus10007081 [exp] 107 / 4e-27 AT5G55150 45 / 6e-05 Protein of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078900 [exp] 127 / 1e-35 AT5G24040 52 / 1e-07 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007080 pacid=23153221 polypeptide=Lus10007080 locus=Lus10007080.g ID=Lus10007080.BGIv1.0 annot-version=v1.0 ATGGTTCTCACAGGGATATCCGTTCCAGCTTTTGCCTATATCAGAATGGGAGCGCCGTGGGAGTGGGAGCATTTCTGGAAGAAGCATTCTGCTATCGTAG ACCCCCATGGTACTACTGACACAGCAAATGGAGGAGGACGGTATATGATCCTCTGTAACGGGGTTTGGTTGAGGAGGAAGTTGTACGCTCTGAGTCTGCA GGGGACTCTGGCGGTTATCGAGGAAGACATCGACACAGATGGCAGTAACCGTGGATTCAGGATTGGTGCGGTGTGTAAACAGGATAGAGCGGTACCTTGT GCTCCGTTTAAGCAGTTTAGGGAGTGTTTGGTGGAATCTGGAGGGGAAGTTCTTCTGGTTTTCCTGGTGTTTAAGAAATGTAGGGAGAAGGTGGATGGAG TGGAAGTTTATAGCCTTGATGTTGGGAAGCTGGAGTGGGTTGGAACCAACTGTTGTGTATCTGTTGATGCTCCATGGGAAGTCGGAGTAGCATGCAAGAG GAATTGCGTCTACTTCAAGGCCAATGATTTCGATGAATGGTCCGAATATGACTTGGAAATCGGAACTATCCTTCCCTTTCCTAACCTTGATTCTGGAGTC GATTGTTCTTAG
AA sequence Show only first row Show all	>Lus10007080 pacid=23153221 polypeptide=Lus10007080 locus=Lus10007080.g ID=Lus10007080.BGIv1.0 annot-version=v1.0 MVLTGISVPAFAYIRMGAPWEWEHFWKKHSAIVDPHGTTDTANGGGRYMILCNGVWLRRKLYALSLQGTLAVIEEDIDTDGSNRGFRIGAVCKQDRAVPC APFKQFRECLVESGGEVLLVFLVFKKCREKVDGVEVYSLDVGKLEWVGTNCCVSVDAPWEVGVACKRNCVYFKANDFDEWSEYDLEIGTILPFPNLDSGV DCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007080 [exp]	0	1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	10.3	0.7688
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	18.0	0.7169
					Lus10038619 [exp]	18.7	0.7220
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10020124 [exp]	19.2	0.6952
					Lus10022836 [exp]	19.3	0.7200
AT5G19875			unknown protein		Lus10006311 [exp]	21.2	0.7372
					Lus10000169 [exp]	21.7	0.7187
AT2G27550		ATC	centroradialis (.1)		Lus10020600 [exp]	21.8	0.7268
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10034980 [exp]	29.3	0.7293
					Lus10040989 [exp]	30.3	0.6729

Compare expression of checked genes

Lus10007080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.