Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55150 43 / 0.0002 Protein of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020455 [exp] 138 / 2e-36 ND 42 / 8e-04 Lus10007078 [exp] 117 / 8e-31 ND / Lus10007080 [exp] 107 / 6e-27 ND / Lus10035492 [exp] 48 / 9e-06 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 47 / 2e-05 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 45 / 8e-05 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078900 [exp] 148 / 2e-41 AT5G24040 52 / 1e-07 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) Potri.002G014500 [exp] 49 / 5e-06 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 47 / 2e-05 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 46 / 3e-05 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.003G127700 [exp] 46 / 3e-05 AT5G55150 56 / 2e-08 Protein of unknown function (DUF295) (.1) Potri.004G179685 [exp] 45 / 6e-05 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.001G277400 [exp] 44 / 0.0002 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10007081 pacid=23153262 polypeptide=Lus10007081 locus=Lus10007081.g ID=Lus10007081.BGIv1.0 annot-version=v1.0 ATGGCATCAAATATCCAAAAGAAGAAAACGAACAGGAAGAAAAAATGTCATAACGATCGAGCACAAGAGCCCTCCAGCAGCAGCAGCAGCAAGCAATTCA GCTCCAAGATAAATTCATGGCCAAATCTCCCAGATCAGCTCATCCGCATAATAGCAAAAGAGTCCACTTTCTCCACCACAGATCGAACCGTCGACAAAGA ATGGTCCCTCATGCACAACATTTCCTCCTCCACAGTCACCAAATCATGCCGAATAACTTCCAACAAATCCGGCCACTCCACCGCCATCCTAGGACCCCGA ATCGAGCTTCACGACAACGGATTCCGCCAGATCCGGTTGAACCCAGTGATCGGTCGTGGTTACTGGAAACGGGGAGGAAGATGGAAGATCCCCGACCCCA GAATCCTAGACTTCCTGGGATGCACTTGTGGGTTCATGCTGACCAAATCGCCGCCGTTCCCAGGCAAGACGGAGGAGGAGCTAACGCTGTGGGACCCGTA CCTGGAAATGACGTGTTTTTTACCAGAGTGGTCCCCACTCATCCCCATTTCATTTGCTGCTGTGTCTACCTCCCTCAGATCCCCACCTAAAGACGGGAAA AATTTACCGATTACTGTTGTGCTCACGGGAACCAGTTGTCCGGCGTTTGCATTCTACAAATGGGATCGGGGGGACGATTACACGTGGCAGAAGAGGGATT ACGAGATTGTGGACCCCAATTCCTCATCTGGAGGTTTAATGAACTTGAGCCATGGGATTTGGTTTCGGAGAAAGTTCTATGCTTTGAGCTCCGATGGTAC GTTAGCTGTTATGGAAGAAGTGGATTCCGATGTCAAGATTACGAAACTGGGGAAGAAGAGAGCCGTTCCCGATTCGACTGTGGGGTGCGGTGTGAAATAC AGCTACAGGGAGTGCTTGGTTGAATCTGAAGGGGAGATTTTGCTGATTTTCTTGGTGTTGAGGAAAACAGAGGAGATGATGGTGGAAGAAGTGCAGGTTT ATAGACTGGATACTGAGAAATTGGTATGGAAGAGGAAGAGGTGCCTTGGTGGGGCGGCTCTGTTTCTTGCGCCGGGTTGCTGCATGTCGGTTCCGGTCGG GAAGTTGTCGGAATGCAGGGGAGATTGTATTTACTTTGTTTCTGGAGGAGACATTGATAAAGGTGGAAGCAGCTGGTGGGTTTATGACGTTGGGACGGAG GTTATTTCTGGTTGTGGAAAGGATTTTAGTGGGAGGACAGATTTGTTTTCCACTGTAGCTGGAAATCAGTATTGA
AA sequence Show only first row Show all	>Lus10007081 pacid=23153262 polypeptide=Lus10007081 locus=Lus10007081.g ID=Lus10007081.BGIv1.0 annot-version=v1.0 MASNIQKKKTNRKKKCHNDRAQEPSSSSSSKQFSSKINSWPNLPDQLIRIIAKESTFSTTDRTVDKEWSLMHNISSSTVTKSCRITSNKSGHSTAILGPR IELHDNGFRQIRLNPVIGRGYWKRGGRWKIPDPRILDFLGCTCGFMLTKSPPFPGKTEEELTLWDPYLEMTCFLPEWSPLIPISFAAVSTSLRSPPKDGK NLPITVVLTGTSCPAFAFYKWDRGDDYTWQKRDYEIVDPNSSSGGLMNLSHGIWFRRKFYALSSDGTLAVMEEVDSDVKITKLGKKRAVPDSTVGCGVKY SYRECLVESEGEILLIFLVLRKTEEMMVEEVQVYRLDTEKLVWKRKRCLGGAALFLAPGCCMSVPVGKLSECRGDCIYFVSGGDIDKGGSSWWVYDVGTE VISGCGKDFSGRTDLFSTVAGNQY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55150			Protein of unknown function (D...		Lus10007081 [exp]	0	1
					Lus10015131 [exp]	9.8	0.7770
AT5G66580			unknown protein		Lus10000739 [exp]	10.2	0.7452
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	11.6	0.7578
					Lus10035120 [exp]	13.6	0.7541
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10019038 [exp]	15.4	0.7274
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10002412 [exp]	16.0	0.7713
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	16.7	0.7572
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	20.5	0.7183
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	21.0	0.7375
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10028774 [exp]	21.4	0.7061

Compare expression of checked genes

Lus10007081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.