Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18265 55 / 2e-08 Protein of unknown function, DUF593 (.1) AT1G70750 49 / 4e-06 Protein of unknown function, DUF593 (.1) AT5G16720 47 / 2e-05 Protein of unknown function, DUF593 (.1) AT4G13630 44 / 0.0001 Protein of unknown function, DUF593 (.1.2) AT4G13160 43 / 0.0001 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020457 [exp] 343 / 2e-118 AT1G18265 77 / 7e-16 Protein of unknown function, DUF593 (.1) Lus10035638 [exp] 111 / 4e-29 AT1G18265 72 / 6e-15 Protein of unknown function, DUF593 (.1) Lus10010755 [exp] 110 / 8e-29 AT5G16720 81 / 2e-17 Protein of unknown function, DUF593 (.1) Lus10007129 [exp] 46 / 3e-05 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10016673 [exp] 45 / 5e-05 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10010774 [exp] 44 / 9e-05 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 44 / 0.0001 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10022171 [exp] 44 / 0.0001 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 42 / 0.0007 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078800 [exp] 86 / 3e-19 AT1G18265 71 / 3e-14 Protein of unknown function, DUF593 (.1) Potri.002G242900 [exp] 43 / 0.0003 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 42 / 0.0004 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10007082 pacid=23153236 polypeptide=Lus10007082 locus=Lus10007082.g ID=Lus10007082.BGIv1.0 annot-version=v1.0 ATGCAGCAGATCGTTAATGGCGTTTGTTCTGCGGTGTTTATATGCTCTGTTCTTGAATTCCACAAGAGGATCCTGCGTCTCTTCCTAGGCCTATTCCTGA TGGAATGCGCCGCCTGCCTCAAATTCCTAGCTCGAATCAGCGAGTCCCGCGGTGGCTTTCTGGTCTTCGGATGTTTCTCCAAGGCGTTCAATTTCCTCTG GCTGTTTCTACTTTTCGCGTTCGGATTCAAGCTCCTTCAGTTCACTCCCTTCTGGATTGGTCTTGTTTTCCACTCTACCGCTAGAGGTAAATCGATTGAT TCCAGAAATGGATTATCTTTTACCAAGGGTTTTAATTTGGCAGTCCAATCAAAGGCCGTGCCATTCGAATCTGGTTTTGAGAATGAGGACTTCAATTCCA AGGTTAATGATTCTGAGACGGAAGATCATGATGATTATGATGATGAATTTGATGTGTTGGCATTGAGGAGGTTGGTTAGGATTGAGAGGAAGAGAGCTGA AGCGGCTGAATTGGAGCTGGAGAAGGAGAGGATGGCTGCTGCATCGGCTGCTGACGAAACAATGGCTATGATCCTTAGGATTCAGAATGAGAAAAGCTGT TTGGAGATTGGAGCCAACCAATACCGTAGGGTGGCGGAACAAAAGCAGGAGTATGATCAAGAAGTCATCGATTCGCTCCGGTGGATTATCATGAACCATG AATGTGAAAGGAGTTTGCTGGAAGAGAAGCTGCAAATTTGCAAGGGGAAATTGCAGCAGTACTTGAACAGACATGAAATGGATGAACTTGACTCGGTTTT CAGTTCATTAGATTCGAGTTTTGAAGATTTTGATCTGGATGATACAGGAGGAGATGGGTTGGTGATGATGGGATTTGAATCTCCTGCTGTTCAGACAAAA GCTTTCGGGGACATGCGTGAATGA
AA sequence Show only first row Show all	>Lus10007082 pacid=23153236 polypeptide=Lus10007082 locus=Lus10007082.g ID=Lus10007082.BGIv1.0 annot-version=v1.0 MQQIVNGVCSAVFICSVLEFHKRILRLFLGLFLMECAACLKFLARISESRGGFLVFGCFSKAFNFLWLFLLFAFGFKLLQFTPFWIGLVFHSTARGKSID SRNGLSFTKGFNLAVQSKAVPFESGFENEDFNSKVNDSETEDHDDYDDEFDVLALRRLVRIERKRAEAAELELEKERMAAASAADETMAMILRIQNEKSC LEIGANQYRRVAEQKQEYDQEVIDSLRWIIMNHECERSLLEEKLQICKGKLQQYLNRHEMDELDSVFSSLDSSFEDFDLDDTGGDGLVMMGFESPAVQTK AFGDMRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18265			Protein of unknown function, D...		Lus10007082 [exp]	0	1
					Lus10011724 [exp]	4.8	0.9731
AT2G41610			unknown protein		Lus10030172 [exp]	6.8	0.9688
AT4G25670			unknown protein		Lus10014961 [exp]	8.4	0.9347
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	9.3	0.9686
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	13.0	0.9667
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	13.8	0.9648
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	14.5	0.9627
AT2G21180			unknown protein		Lus10007573 [exp]	16.3	0.9179
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	16.9	0.9444
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	17.9	0.9553

Compare expression of checked genes

Lus10007082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.