Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45650 924 / 0 subtilase family protein (.1) AT5G45640 743 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 598 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 588 / 0 ARA12 Subtilase family protein (.1) AT2G04160 583 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT3G14067 527 / 9e-177 Subtilase family protein (.1) AT2G05920 523 / 2e-175 Subtilase family protein (.1) AT4G34980 512 / 3e-171 SLP2 subtilisin-like serine protease 2 (.1) AT5G51750 511 / 1e-170 ATSBT1.3 subtilase 1.3 (.1) AT3G14240 503 / 1e-167 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020458 [exp] 1461 / 0 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10026062 [exp] 1093 / 0 AT5G45650 857 / 0.0 subtilase family protein (.1) Lus10002780 [exp] 1084 / 0 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10016064 [exp] 580 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038774 [exp] 571 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 568 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 568 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 565 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10019285 [exp] 555 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076700 [exp] 1045 / 0 AT5G45650 970 / 0.0 subtilase family protein (.1) Potri.001G468800 [exp] 606 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 600 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 593 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 570 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 563 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.006G001600 [exp] 561 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.004G161400 [exp] 551 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.011G050000 [exp] 550 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G450600 [exp] 548 / 0 AT1G32960 772 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10007083 pacid=23153225 polypeptide=Lus10007083 locus=Lus10007083.g ID=Lus10007083.BGIv1.0 annot-version=v1.0 ATGAGTATCAGTAATTATCTTCTCCTCCTCTTCCTCCTTTGTTTTTCTCTTCTGGCAGTCGCCGCCGTCAACTGTGAAGCTGAACAAGAACAAAGGACTT ACATAGTCTACTTGAGAGGAGATGAGCACATTAGTACCAGTAGTGTGGACGAGATAGCACAAACCCACCACTCCTATTTATCTTCCGTCAAGGATTCCGA CGAAGACGCAGCTTCCTCCCTTATCTATAGCTACAAACACAGCTTCAATGGCTTCGCCGCTTCCCTCACCCCTCATCAAGCCTCCAAACTCAAAGAAATG GAGCAAGTGGTGGGGGTGGTAGAGAGCCGGCCGGGGAAGTACTCAAGCCAAACTACAAGGTCTTGGGAATTCTCAGGGCTGAATGAGGCAGCTGCTTATG ATTCCAATAATGAGAAAGGGGTTGGTCATCAGTCGCTGAAGAATTACGTGCTTCAGAGGGCTGGCTATGGCAAGTCCATTATTGTTGGGGTCATGGATAG TGGGGTGTGGCCAGAAGCAGAAAGTTTTAGCGATGAAGGGATGGGAGCCATCCCAAAATCATGGAAAGGAATCTGCCAAACTGGCTCTGATTTCAACTCC TCTCATTGTAACAATAAAATAATTGGAGCAAGGTACTACCTCAAGGGCTTCGAGAGATACTACGGCAAACTGAATGAATCCGAAGACTCCAGGTCACCGC GTGACATGGACGGCCATGGGACCCACACGGCCTCCACCATCTTGGGCCGGCAAGTTCACAACGCTTCCGCATTCGGCGGCTTTGCCCGTGGTACAGCCTC CGGCGGGGCTCCGTTAGCCCGGCTGGCCGTGTACAAGGTGTGTTGGGCCATTCCCAATAGAGAAAAGTCCAATGGGAATACTTGCTTTGAGGAGGACATG CTGGCTGCAATGGACCAAGCCATCGCCGACGGCGTCCACGTCATCAGCATCTCTATCGGCTCCGATACCCCTATCAACCACACCGACGATGGGATTTCGA TCGGAGCGTTTCATGCCTTGAAGCGAAACATTGTTGTCGTATGCGCAGCTGGCAATTCGGGTCCCACACCTTCCACGCTGTCAAATCCTGCTCCGTGGAT CATGACGGTTGGTGCTAGCAGCTTGGATCGTGCGTTTCATGGGCCTATTGTTCTAGGAAACGGCAAAACTATAACGGGTCAAACAGTGACGCCGGGCAAA CTTGACAAAGCGCTCCCATTGGTATACGCGGCGGACGCAGTCCACCCCAATGTGCCCAAGAACGAAACGAACCAATGCCTTCCGAACTCGTTGTCCCCCG AAAAGGTAAAAGGCAAGATAGTGTTCTGCATGAGAGGTACAGGGATGAGAGTTGGCAAAGGCATAGAAGTGAAAAGGGCTGGCGGCGCCGGCTTCATCCT AGGAAACGCCGCCGCAAACGGCGACGAGGTCTCCGTGGACGCACACGTGCTTCCCGGTACGGCCGTCGTGTACAAGGACGCACTTGAGATCATCGACTAC ATCAACTACACCAAGAATCCAACGGCCCTGATTGGAGAAACGAAGACCGTGTTACGGTACAGGCCGGCCCCTTTCATGGCCGCTTTCACTAGCCGGGGTC CTAACGTCATCCATCCCTATGTTCTCAAGCCGGACATCTCGGCTCCAGGACTAAACATACTAGCGGCATGGAGCCAAGCTTCATCCCCGACTAAACTGTC TGGGGACAATCGACTCGTTAAGTATAATATCGAGTCCGGAACGTCCATGGCTTGCCCTCACGTTGCTGGTTTAGCCGCACTTCTCAAAGCAATCCATCCC ACCTGGAGTACCGCCGCCATTAGATCGGCCATCACTACAACTGCTTGGATGAGGAACAACATGGGCGGGGCAATAACCGACCCATCGGGGAAACCCGCGA CACCCTTCGCATTCGGGTCGGGTCACTTCCGCCCAACGAAGGCAGCGGATCCTGGGCTTGTATACGACGCGTCGTATAAGGACTACTTCCTTTATCTCTG CAGCTTCGGCGTGAAAAACGCCGACTCAAAATACAAGTGCCCGGAATCTTCGCCTCCGGAATACGACCTCAACTACCCATCAGTGTCGGTGCCGAAATTG AACGGTACCATAACCATCAAGAGGACGGTGACGAACGTAGGTGGTTTAGGGAAAGCAGTGTACTTTTTCAGTGCGAAGCCGCCGTTGGGGATATCGGTGA AGGCGAAGCCGAGCGTTTTGCTCTTCAGCCGGGTTGGGGAGTGGAAGAGCTTCACGTTGACGATCAGGGCGCGGAATGGGAAGGAGGCGGAGAATTACAA GGGTAATGAGTATGGATTTGGGTGGTTTACTTGGAGGGATAATTATCATGTTGTCAGAAGTCCTATGGCGGTATCCTTAGCCTAA
AA sequence Show only first row Show all	>Lus10007083 pacid=23153225 polypeptide=Lus10007083 locus=Lus10007083.g ID=Lus10007083.BGIv1.0 annot-version=v1.0 MSISNYLLLLFLLCFSLLAVAAVNCEAEQEQRTYIVYLRGDEHISTSSVDEIAQTHHSYLSSVKDSDEDAASSLIYSYKHSFNGFAASLTPHQASKLKEM EQVVGVVESRPGKYSSQTTRSWEFSGLNEAAAYDSNNEKGVGHQSLKNYVLQRAGYGKSIIVGVMDSGVWPEAESFSDEGMGAIPKSWKGICQTGSDFNS SHCNNKIIGARYYLKGFERYYGKLNESEDSRSPRDMDGHGTHTASTILGRQVHNASAFGGFARGTASGGAPLARLAVYKVCWAIPNREKSNGNTCFEEDM LAAMDQAIADGVHVISISIGSDTPINHTDDGISIGAFHALKRNIVVVCAAGNSGPTPSTLSNPAPWIMTVGASSLDRAFHGPIVLGNGKTITGQTVTPGK LDKALPLVYAADAVHPNVPKNETNQCLPNSLSPEKVKGKIVFCMRGTGMRVGKGIEVKRAGGAGFILGNAAANGDEVSVDAHVLPGTAVVYKDALEIIDY INYTKNPTALIGETKTVLRYRPAPFMAAFTSRGPNVIHPYVLKPDISAPGLNILAAWSQASSPTKLSGDNRLVKYNIESGTSMACPHVAGLAALLKAIHP TWSTAAIRSAITTTAWMRNNMGGAITDPSGKPATPFAFGSGHFRPTKAADPGLVYDASYKDYFLYLCSFGVKNADSKYKCPESSPPEYDLNYPSVSVPKL NGTITIKRTVTNVGGLGKAVYFFSAKPPLGISVKAKPSVLLFSRVGEWKSFTLTIRARNGKEAENYKGNEYGFGWFTWRDNYHVVRSPMAVSLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	0	1
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	1.4	0.9494
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	2.8	0.9332
					Lus10018463 [exp]	4.5	0.9302
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	4.6	0.9197
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10030723 [exp]	4.7	0.9489
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10005576 [exp]	6.2	0.8912
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	6.5	0.9269
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10015779 [exp]	9.2	0.9386
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	13.9	0.9194
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10041595 [exp]	14.4	0.8324

Compare expression of checked genes

Lus10007083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.