Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34060 420 / 5e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 397 / 6e-135 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G23320 236 / 4e-73 TAR1 tryptophan aminotransferase related 1 (.1) AT1G70560 229 / 1e-70 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT4G24670 209 / 3e-62 TAR2 tryptophan aminotransferase related 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028695 [exp] 776 / 0 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039944 [exp] 219 / 3e-66 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10006199 [exp] 209 / 5e-63 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10036846 [exp] 209 / 1e-62 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10027678 [exp] 207 / 1e-62 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 181 / 1e-49 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042084 [exp] 125 / 5e-33 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G064000 [exp] 465 / 1e-161 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G063800 [exp] 456 / 6e-158 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.010G044500 [exp] 240 / 1e-74 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 231 / 5e-71 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.012G083300 [exp] 222 / 3e-67 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.T125108 [exp] 218 / 1e-65 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF04864 [flax] [poplar] Alliinase_C Allinase CL0001 [flax] [poplar] EGF PF04863 [flax] [poplar] EGF_alliinase Alliinase EGF-like domain
Representative CDS sequence Show only first row Show all	>Lus10007085 pacid=23153266 polypeptide=Lus10007085 locus=Lus10007085.g ID=Lus10007085.BGIv1.0 annot-version=v1.0 ATGAACATTTCCTTACTTGGGTACAATTTCTATTTCGTCGGAGGTGGGCTGAGCTGGAGCAGGGGAGCGGCGGAGGAAGCAGAGTTGGTGGCGGCCATCT CATGCTCCGGCCACGGCAGAGCCTATCTTGACGGCGAGATCTCCGGCGAAGGTGGGTTGCTTCCAGGTTGTGAGTGCAACACTTGCTACGGTGGGAGTGA TTGCTCGGCGTTTGATCCTTCCTGCTCGGCTGATGCCGATGGAGGCAATCCCCTGTTTCTGGAACCATTCTGGATGAAACACGCCGCCGCCAGCGCCGTC CTCATCGCCGGCCACCACCGGATGGGCTACTCCTATAGCGACTCGACCTTCACCTCGTCGGAGCTCGAGCGGCACATCCGACAACTCCACTCCATCGTTG GAAACGCCGTCACCGAGAACAAATCCATCCTCTTCGGCGCCGGGTCCACCCAGCTGCTCAACGCCGCCGTCCATGCCTTAAGCTCCTCCTCCGCCGTCGC CGCCGGAGTAGTAGCCTCCCCGCCGTTCTACCCCGTTTACGAATTACAAACCGAATTCTTCGATTCCAAGGATTTCCAATTCCAAGGAGACGCGTCGACT CTGCTCCGAAACAAATCGAGTAGTAGTAATCCTGATGGGAAGAGGATTATTGAATTCGTCACGTCCCCTAACAACCCCGACGGGAAATTAAACAGGGTTG TTCTCCAAGGGTGGCCGAATCACAAGGCGATTTACGACAGGGCGTATTTCTGGCCGCATTTCACTCCGATACCGATTCCGACGACGGCGGATGACGATCC CGAGGTGGTGATTTTCTCGCTGTCGAAGCTCACTGGCCACGCCGGGTCGCGATTTGGGTGGGCGATCGTGAAGGACGAGGCGGTGTACGGTGAAATGGTG AAGTACTTGCAATTGAACACGATGGGCGACTCACGAGAGAGCCAGCTGAGAGCTCTGAAGCTGCTAAAGACTGTGATTGGCGGCGGAGTTTTTGCCGACG GCGAGGGGTCGTCATCGATCTTTGAATTTGGTTACGAAACCATGAAGAAACGGTGGCAAAGGCTCAAGAGCGTTGTCGAAACGTCGAAACGTTTCTCACT TCAGGAAGTTTCCTCTCAGTACTGCAGTTTCTTTGGTATAGAAAGAGAGGCTTCCCCGGCGTATGCGTGGTTGAAATGCGAAGGAGAGAAAGACATCGGT TCGTCGTGTTATGAGGTTCTTAAAAGAGGAGGGATAATAGGGAGGGAAGGGACAAAATTTTCAGCCTCCGATCGACATGTTAGACTAAGCCTCATTAAGA CTGAGGATGATTTCAATATACTTCTACACAAGCTTCGCATATTGATCTCTTCCGAATCACAACCGGCACATGATATATATGTTCTTAACGATGTCGACCG AAGAGGCCAAGCGTTTCCAAGAAAAATGTGA
AA sequence Show only first row Show all	>Lus10007085 pacid=23153266 polypeptide=Lus10007085 locus=Lus10007085.g ID=Lus10007085.BGIv1.0 annot-version=v1.0 MNISLLGYNFYFVGGGLSWSRGAAEEAELVAAISCSGHGRAYLDGEISGEGGLLPGCECNTCYGGSDCSAFDPSCSADADGGNPLFLEPFWMKHAAASAV LIAGHHRMGYSYSDSTFTSSELERHIRQLHSIVGNAVTENKSILFGAGSTQLLNAAVHALSSSSAVAAGVVASPPFYPVYELQTEFFDSKDFQFQGDAST LLRNKSSSSNPDGKRIIEFVTSPNNPDGKLNRVVLQGWPNHKAIYDRAYFWPHFTPIPIPTTADDDPEVVIFSLSKLTGHAGSRFGWAIVKDEAVYGEMV KYLQLNTMGDSRESQLRALKLLKTVIGGGVFADGEGSSSIFEFGYETMKKRWQRLKSVVETSKRFSLQEVSSQYCSFFGIEREASPAYAWLKCEGEKDIG SSCYEVLKRGGIIGREGTKFSASDRHVRLSLIKTEDDFNILLHKLRILISSESQPAHDIYVLNDVDRRGQAFPRKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040380 [exp]	1.0	0.9428
AT5G59050			unknown protein		Lus10001626 [exp]	2.0	0.9277
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	2.4	0.9333
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	3.2	0.9253
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	3.5	0.9361
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	3.9	0.8946
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	6.7	0.9097
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017871 [exp]	6.9	0.9051
AT2G25625			unknown protein		Lus10013129 [exp]	7.0	0.9112
AT1G20823			RING/U-box superfamily protein...		Lus10025162 [exp]	7.5	0.8949

Compare expression of checked genes

Lus10007085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.