Plant FIBer expression Database

Lus10007086 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G09570 127 / 4e-38 Cox19-like CHCH family protein (.1)
AT5G64400 119 / 3e-35 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020462
[exp]
195 / 5e-65 AT5G09570 171 / 1e-55 Cox19-like CHCH family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G282900
[exp]
149 / 1e-46 AT5G09570 142 / 2e-44 Cox19-like CHCH family protein (.1)
Potri.009G078100
[exp]
140 / 2e-43 AT5G09570 127 / 2e-38 Cox19-like CHCH family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0351 CHCH PF06747 CHCH CHCH domain
Representative CDS sequence
>Lus10007086 pacid=23153263 polypeptide=Lus10007086 locus=Lus10007086.g ID=Lus10007086.BGIv1.0 annot-version=v1.0
ATGGCTCGCCGTAGCTCTGGCCGTAGCTCTAACCGCAGCTCCGGAGGAGGAAGATCTGCTCGTAGCCCAACTCCTAGCAGTTCTGCTGCACGTAGCCCAC
CTCCTCAAACAGCCCATCAGGCTCCTCCTCCTGCTGTTGCTCAGAGCAGTGGCGGTGGATCCATGCTTGGAGGGATTGGTTCGTCCATCGTTCAGGGGCT
CGGTTTTGGTACTGGAAGTGCAGTTGCCCACAGAGCTGTTGATGCTGTGATGGGTCCTCGTACAATTCAACATGAAACTGTTGTCTCCGAGGCTGCTGGT
ATCCCAGCCCCTGCTGCAAACACCATGTCTGCTATTGATGGCTGCAATGTTCATACCAAGGCCTTCCAGGATTGCCTGAACACCTCCGGGAGCGACATCA
GCAAGTGCCAGTTCTACATGGACATGCTGGCGGAATGCAGGAAGAACTCTGGTTCTGGATTGACCGCCTAA
AA sequence
>Lus10007086 pacid=23153263 polypeptide=Lus10007086 locus=Lus10007086.g ID=Lus10007086.BGIv1.0 annot-version=v1.0
MARRSSGRSSNRSSGGGRSARSPTPSSSAARSPPPQTAHQAPPPAVAQSSGGGSMLGGIGSSIVQGLGFGTGSAVAHRAVDAVMGPRTIQHETVVSEAAG
IPAPAANTMSAIDGCNVHTKAFQDCLNTSGSDISKCQFYMDMLAECRKNSGSGLTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G09570 Cox19-like CHCH family protein... Lus10007086
[exp]
0 1
AT4G37830 cytochrome c oxidase-related (... Lus10011574
[exp]
1.0 0.8991
AT2G20940 Protein of unknown function (D... Lus10025069
[exp]
3.7 0.8854
AT3G20890 RNA-binding (RRM/RBD/RNP motif... Lus10009943
[exp]
5.3 0.8700
AT5G42060 DEK, chromatin associated prot... Lus10032409
[exp]
5.7 0.8742
AT1G15230 unknown protein Lus10025791
[exp]
7.1 0.8093
AT3G43520 Transmembrane proteins 14C (.1... Lus10027640
[exp]
12.2 0.8765
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Lus10014591
[exp]
16.2 0.8737
AT2G42910 Phosphoribosyltransferase fami... Lus10031395
[exp]
16.2 0.7950
AT2G43090 Aconitase/3-isopropylmalate de... Lus10007488
[exp]
16.4 0.8402
AT3G60380 unknown protein Lus10028193
[exp]
20.2 0.7570

Lus10007086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.