Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13235 545 / 0 DDI1 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) AT2G17190 44 / 0.0002 ubiquitin family protein (.1) AT1G53930 41 / 0.0004 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020464 [exp] 673 / 0 AT3G13235 546 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166100 [exp] 579 / 0 AT3G13235 599 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Potri.001G469300 [exp] 568 / 0 AT3G13235 613 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Potri.005G011700 [exp] 40 / 0.0003 AT2G35635 109 / 2e-32 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain CL0129 [flax] [poplar] Peptidase_AA PF09668 [flax] [poplar] Asp_protease Aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10007088 pacid=23153247 polypeptide=Lus10007088 locus=Lus10007088.g ID=Lus10007088.BGIv1.0 annot-version=v1.0 ATGAGGATCACTATAATGACTTCTGATGAACAAATCAGTTCCTTGGATGTTGATCCAAACGAGACTGTTGAAAACATAAAAGCATTGCTTGAAGTGGAGA CTCAGGTCCCCCTTCAGCAACAACAGTTGTTATATAATGGCAGAGAGATAAGGAATGCTGAAAAATTGAGTGCTCTCGGTGTTAAAGATGATGATTTGAT CATGATGGTTCCCAGGGCACCCAGCGCTCAGTCAAATGACATGAGGTCCAATCCCGGTGACCCTTCAGAGAATGCTGCAGCCTTTCAAGAACAAGTACGG CGTGATCCCAATTTGATGTCCCAACTGTTTCAGTGTAGGGAGGTTTGTATGCCTAGTCTGTTCTTTCCTACATGGCCTAACGTGGTTCCTCTCTTTTTGG GTCTCCTCGACACTACTCAGGCTGACCCGGAACTTGCACAACTTGTTGTCGGAAATGATCTCAACAGACTTCAGGAGCTGTTAAAGCTGCGCCAGCAGCA AAGATCTGAATTACGTCGCCGACAAGAGGCTGAACTTGCACTTCTTGAGGCGGATCCTTTTGATGTTGAGGCCCAGAAGAAAATTGAAGCTGCCATTCGC CAGAAAGGCATTGATGAAAACTGGGAAGCAGCGCTGGAACATAATCCTGAGGCTTTTGCTAGGGTGGTTATGCTATACGTGGATATGGAGGTCAATGGTG TTCCTCTCAAGGCATTTGTTGACAGTGGCGCTCAGTCCACAATAATATCAAAAAGCTGTGCTGAGAAATGTGGATTGCTGAGGCTCTTAGACCAGCGTTA CAAAGGTATTGCTCATGGTGTTGGTCAGTCAGAGATATTGGGCCGTATACATGTTGCTCCAATCAAGATTGGCACGATATTTTATCCTTGCTCCTTCTTG GTACTGGATTCTCCTAACATGGAATTCCTCTTTGGACTTGACATGCTTCGTAAGCACCAGTGTATTATCGATTTAAACGAGAATGTTCTAAGAGTCGGCG GTGGAGAAGTTTCAGCACCATTTTTGCAAGAGAAGGACATTCCACCTAGTTTTTTAGATGAGGAACGCTACAAAGAAGCATCTAGCTCCGGAAGCCCTGC CGTGGCAGCAACATCTGGGAAGAAGAGTGATACGCAAGTAGTAGGCGCACCATCTGGAGCTACAAGCGGAGGCAATATGAACCAGGGAGCTGAGTTTGAG GCGAAAGTTAGGAAGCTGGTGGAACTTGGGTTTGGAAGAGAAGCAGTGATTCAGGCGCTTCAATTGTTCCAGGGGAATGAAGAACAGGCTGCTGGATTCC TATTCGGTGGATGA
AA sequence Show only first row Show all	>Lus10007088 pacid=23153247 polypeptide=Lus10007088 locus=Lus10007088.g ID=Lus10007088.BGIv1.0 annot-version=v1.0 MRITIMTSDEQISSLDVDPNETVENIKALLEVETQVPLQQQQLLYNGREIRNAEKLSALGVKDDDLIMMVPRAPSAQSNDMRSNPGDPSENAAAFQEQVR RDPNLMSQLFQCREVCMPSLFFPTWPNVVPLFLGLLDTTQADPELAQLVVGNDLNRLQELLKLRQQQRSELRRRQEAELALLEADPFDVEAQKKIEAAIR QKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAEKCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGTIFYPCSFL VLDSPNMEFLFGLDMLRKHQCIIDLNENVLRVGGGEVSAPFLQEKDIPPSFLDEERYKEASSSGSPAVAATSGKKSDTQVVGAPSGATSGGNMNQGAEFE AKVRKLVELGFGREAVIQALQLFQGNEEQAAGFLFGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10007088 [exp]	0	1
AT5G13500			unknown protein		Lus10009691 [exp]	3.5	0.9345
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	11.8	0.9386
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10033776 [exp]	13.6	0.9159
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10041743 [exp]	15.7	0.8768
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	17.3	0.9386
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	19.3	0.9285
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	20.9	0.9352
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	22.6	0.9274
AT5G65030			unknown protein		Lus10026049 [exp]	26.4	0.9288
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	28.2	0.9277

Compare expression of checked genes

Lus10007088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.