Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55750 545 / 0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) AT3G61420 537 / 0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020465 [exp] 1004 / 0 AT1G55750 607 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107400 [exp] 662 / 0 AT1G55750 645 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) Potri.005G061432 [exp] 370 / 9e-124 AT1G55750 383 / 2e-129 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) Potri.005G061366 [exp] 291 / 2e-95 AT3G61420 233 / 9e-74 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10007089 pacid=23153259 polypeptide=Lus10007089 locus=Lus10007089.g ID=Lus10007089.BGIv1.0 annot-version=v1.0 ATGTCGAGCACCCAAGTGACGAAGTCGGTGAGGTACAAGACAGGAGTCAACAAGCCTGGCACTCCTGGCCGTCTGTCACTGGGCGTGAGTTATATATTCG AGTTTGACAGTTATGAAGATCTCAACATTTGTAGGGAATTTCTGGGAAGAGCCCTTTCAAATCCAACAGAGACTCCAAATGTTAAAGCCGATTCACAAGT TCCTTTAAACCAACCTGGTACAGATGAATTGCTTTCCCGTGTGAGACTGCTGCAGGACAATAGTGAGTTGCAAAAATTGCATAAACGCTTTGTGGGTGAT GGAGTGCTGACAGAAGCTGAATTCTGGGCTACGAGGAAGCAATTGCTGGAGAAGGATTGCAACAGGAAGTCAAAACAACGAGTAGGCCTTAAAAGTTCTA TGTTGGCCGAGGCAAAGCCATTAATCGACGGTCGAACGAACAGGGTTACGTTTAATTTGACACCAGAGATAGTCCGTGAGATTTTTGCAGAGAAACCGGC AGTTCACCAGGCTTATTTGGACTACGTTCCCGGTAAGATGACAGACAAGGACTTCTGGACTAAATATTGTAGAGCAGAGTACCTCCAGCGGTCGAAGAAC ATTCAAGCTGCTTATGCAGAAGCCGCTGAAGACGAGGAGCTTGCTCTTTTTTTGAAGCCTGATGTCATTTTGGCCAATGAAACTCGCCGGAAGATCAGAC GTGTTGATCCAACACTAGACATGGACGCTGACCTAGGTGATGATTATTCACATCTTCCTTTCTGCTTCCGAGCCTATATTCAAACCAACTGGGTCGACGT GCCTGCTCAGCTTTCATCTTGTCATGAAGAACTCCGTCTGAGCAATACGACGGCCTATTTGTTGAAAGCTCATGGTCATGGGATTGCCCGCGATGGTGTC AAAGAAGTACTGGAATCAGAGCAAGAAGTAGACAGAAGAACTAGAACTTTACTGCAAGACCTTAACAGGCACGCATCTGTTGTTCTTGAGGGAGCTCCAA TTGGCAAGTATGAAGAACAGTTTAAAGACACACAAACTGTAGCAGAGGCACTTAAACGATCAAAACAAGTGCTTTCCTGTCATTCTTTGGTGCTAGAACA TAGCACGGATAGTGGTGATGGGGGCAAGACGGCAGACCAAGAGAGATTAAAGAGGATGATATCCCAAGCAATGTCAATTGATGATCTTCAAGCATCAAAT GATCACCATCTTGCGCCACTCTGCATCAAGGACCCCAGAGATTATTTTGATTCACAACAAGGTGGCACATATAGAAATTCCAGAGACTCGACTGGTGGAA TAAAGGGGAACTTGGGTAGCCAGGAAGCATACTCTTCATTGAGGGACTCCATCTCTCGTATTATGTCTATGGGATTGAATGATCCCATAGTTACATCCGA TGTAGCTCTTAAGGTTCTCTCCGTGCTGACCCATAACATCTCAAGCACAAAGTATAATGTGGGGAAGAATCCCGGTGAAAGTCTTTTAGACGGTCTGCCA CCCCCAGTTAGGGAGGAGTTGCTACATCATTGGATTTCAATTGAAGAGTTGTTAAAGCATTTTTGGTCATCATATCCGTTAACGACCCAGTACCTTAATA CCAAGGTAACCCGATTAAAAGATGCAATGTCAAAAATTGATTCTCAGCTGCAGAAGTTGAAGGAAGCTGTACAGCCAGACATCCGGCATCAAGTTACACT TCTTATCCGGCCAATGCAGCAGGCGCTAGAGGCAGCAATGCAGCATTATGATGCAGATCAGCAGAAGAGAGCGTCAAAAAAACCAAATGGGTACAGTTGA
AA sequence Show only first row Show all	>Lus10007089 pacid=23153259 polypeptide=Lus10007089 locus=Lus10007089.g ID=Lus10007089.BGIv1.0 annot-version=v1.0 MSSTQVTKSVRYKTGVNKPGTPGRLSLGVSYIFEFDSYEDLNICREFLGRALSNPTETPNVKADSQVPLNQPGTDELLSRVRLLQDNSELQKLHKRFVGD GVLTEAEFWATRKQLLEKDCNRKSKQRVGLKSSMLAEAKPLIDGRTNRVTFNLTPEIVREIFAEKPAVHQAYLDYVPGKMTDKDFWTKYCRAEYLQRSKN IQAAYAEAAEDEELALFLKPDVILANETRRKIRRVDPTLDMDADLGDDYSHLPFCFRAYIQTNWVDVPAQLSSCHEELRLSNTTAYLLKAHGHGIARDGV KEVLESEQEVDRRTRTLLQDLNRHASVVLEGAPIGKYEEQFKDTQTVAEALKRSKQVLSCHSLVLEHSTDSGDGGKTADQERLKRMISQAMSIDDLQASN DHHLAPLCIKDPRDYFDSQQGGTYRNSRDSTGGIKGNLGSQEAYSSLRDSISRIMSMGLNDPIVTSDVALKVLSVLTHNISSTKYNVGKNPGESLLDGLP PPVREELLHHWISIEELLKHFWSSYPLTTQYLNTKVTRLKDAMSKIDSQLQKLKEAVQPDIRHQVTLLIRPMQQALEAAMQHYDADQQKRASKKPNGYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	0	1
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	1.0	0.8959
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	2.8	0.8335
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	6.0	0.8635
AT2G48060			unknown protein		Lus10008175 [exp]	6.2	0.8572
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	7.9	0.8241
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	8.4	0.8347
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	8.9	0.8564
AT5G23490			unknown protein		Lus10004286 [exp]	13.4	0.7900
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	13.8	0.8058
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	15.6	0.7998

Compare expression of checked genes

Lus10007089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.