Plant FIBer expression Database

Lus10007091 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71430 81 / 3e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040114
[exp]
140 / 9e-42 AT1G71430 86 / 4e-21 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G035700
[exp]
119 / 1e-33 AT1G71430 100 / 5e-27 unknown protein
Potri.009G083702
[exp]
44 / 6e-06 ND /
PFAM info
Representative CDS sequence
>Lus10007091 pacid=23153251 polypeptide=Lus10007091 locus=Lus10007091.g ID=Lus10007091.BGIv1.0 annot-version=v1.0
ATGGCGGGTTCAAGCAAAGAACTTTTGAATCTGGAGAAGGATGTGTCGGCTTTCCAGACTTCCCTCCTTGTATGTGGTGGTGGGAGGGATTCCACTGCTT
CTTCTCAACCCAAAGTCTCTACTTCTGATGGAAAGCTTGTAACTGCTCCAATCCCTCAAAGCCAAGTCCTTGGAAAAGTTAGAGACTTTCTTGGAGTTTT
TTCAGAAGCTAACCGACAGCTAGAGCAAGATGCCAAGGATGACTCTAAGAACTACGACATTGAAGCGCTCACTGGAAATGAATCTGAAGTCATTGAAATG
GATTTGATGCTGGGTGTAGCAGAGCTTCGGAATGAACAAGCTTTGGCTGCTGCCGAAGCTGCCTTAGCTGGTGCCCAACCATCCACAAAACATGATGCTT
GTAGCAGTGAGTCAGACTCCGAAGATGCAAGTGATGATGACGATGAAAGTGGTAGCGAGAATGGTAGTGATGATGATGGTAGTAGCAGTGAGTCAGACTC
CGGAGATTCAAGTGATGGCGATGATGTTGATGATGAAAGTAGTAGTCTTGGCAATGACACCAAAATGGAAGATGCATTGAAGTTAAGGGGAGATGGTTCA
AGTAGAGTAGTTGCCAGCAAAAGGAGGCCAAAGAAGCAGCCTAAAATTATTGAGCTGCCTTGA
AA sequence
>Lus10007091 pacid=23153251 polypeptide=Lus10007091 locus=Lus10007091.g ID=Lus10007091.BGIv1.0 annot-version=v1.0
MAGSSKELLNLEKDVSAFQTSLLVCGGGRDSTASSQPKVSTSDGKLVTAPIPQSQVLGKVRDFLGVFSEANRQLEQDAKDDSKNYDIEALTGNESEVIEM
DLMLGVAELRNEQALAAAEAALAGAQPSTKHDACSSESDSEDASDDDDESGSENGSDDDGSSSESDSGDSSDGDDVDDESSSLGNDTKMEDALKLRGDGS
SRVVASKRRPKKQPKIIELP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71430 unknown protein Lus10007091
[exp]
0 1
AT4G14965 ATMAPR4 membrane-associated progestero... Lus10042022
[exp]
3.7 0.8654
AT5G42700 B3 AP2/B3-like transcriptional fa... Lus10024689
[exp]
4.5 0.8148
AT3G11591 unknown protein Lus10016986
[exp]
4.5 0.8419
AT3G61113 Ubiquitin related modifier 1 (... Lus10036551
[exp]
8.2 0.8474
AT5G48030 GFA2 gametophytic factor 2 (.1) Lus10027634
[exp]
9.8 0.8089
AT4G31720 STG1, TAFII15, ... TBP-ASSOCIATED FACTOR 10, SALT... Lus10005077
[exp]
12.4 0.8399
Lus10042808
[exp]
15.1 0.7762
AT2G21150 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP... Lus10007576
[exp]
15.1 0.8441
AT1G12650 unknown protein Lus10024493
[exp]
15.2 0.7992
AT5G55140 ribosomal protein L30 family p... Lus10031912
[exp]
15.6 0.8162

Lus10007091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.