Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20650 162 / 5e-52 COPT5 copper transporter 5 (.1) AT2G26975 67 / 1e-14 Ctr copper transporter family (.1) AT5G59040 67 / 2e-14 COPT3 copper transporter 3 (.1) AT3G46900 55 / 4e-10 COPT2 copper transporter 2 (.1) AT5G59030 51 / 1e-08 COPT1 copper transporter 1 (.1) AT2G37925 46 / 6e-07 COPT4 copper transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012501 [exp] 169 / 1e-54 AT5G20650 177 / 5e-58 copper transporter 5 (.1) Lus10022671 [exp] 166 / 1e-53 AT5G20650 176 / 2e-57 copper transporter 5 (.1) Lus10040925 [exp] 132 / 3e-40 AT5G20650 142 / 2e-44 copper transporter 5 (.1) Lus10009819 [exp] 130 / 3e-39 AT5G20650 147 / 5e-46 copper transporter 5 (.1) Lus10040726 [exp] 65 / 9e-14 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10016464 [exp] 56 / 2e-10 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10023045 [exp] 56 / 3e-10 AT2G26975 84 / 2e-21 Ctr copper transporter family (.1) Lus10021107 [exp] 53 / 2e-09 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10017205 [exp] 48 / 2e-07 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140700 [exp] 201 / 9e-68 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 162 / 3e-52 AT5G20650 140 / 1e-43 copper transporter 5 (.1) Potri.009G038700 [exp] 59 / 1e-11 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.006G093200 [exp] 54 / 6e-10 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.001G246000 [exp] 53 / 4e-09 AT5G59030 134 / 9e-41 copper transporter 1 (.1) Potri.009G038800 [exp] 52 / 7e-09 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.006G093300 [exp] 52 / 7e-09 AT2G37925 114 / 3e-33 copper transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10007092 pacid=23153267 polypeptide=Lus10007092 locus=Lus10007092.g ID=Lus10007092.BGIv1.0 annot-version=v1.0 ATGATGCACATGACCATGTACTGGGGAATCAGTGTCACTCTCCTCTTCGACTCCTGGAAAACCGACTCCCTCTTCTCTTACCTCCTCACTTTACTCGCCT GCTTCCTCTTCTCCGCCTTCTATCAATACATGGAAGATCGCCGCCTCCGATTCAAGGCCGCCGCTCTTGCCGCTTCCTCCTTCTCCTCCTCGCCTCCTTC TTTAGTCAACGCCCCCCTCCTCCTCCGCAAGCTAAGTGGCAACCCCATTCAGCCAGCCAAGCTAGCTGGAGCCCTCCTCTTCGGGATCAACTCCGCGATC GGCTATTTTCTCATGTTGGCCATCATGTCCTTCAACGGCGGCGTTTTCCTGGCTATCGTTCTGGGCTTGTCCATCGGCTATTTACTCTTCAGGAGCGGAG ACGACGAGGCGGTCGTCGTGGATAATCCCTGCGCTTGTGCCTGA
AA sequence Show only first row Show all	>Lus10007092 pacid=23153267 polypeptide=Lus10007092 locus=Lus10007092.g ID=Lus10007092.BGIv1.0 annot-version=v1.0 MMHMTMYWGISVTLLFDSWKTDSLFSYLLTLLACFLFSAFYQYMEDRRLRFKAAALAASSFSSSPPSLVNAPLLLRKLSGNPIQPAKLAGALLFGINSAI GYFLMLAIMSFNGGVFLAIVLGLSIGYLLFRSGDDEAVVVDNPCACA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	0	1
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	7.9	0.8226
AT5G16540	C3HZnF	ZFN3	zinc finger nuclease 3 (.1.2.3...		Lus10031527 [exp]	8.5	0.7420
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	9.9	0.8226
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	10.8	0.7885
AT3G05545			RING/U-box superfamily protein...		Lus10029886 [exp]	14.1	0.7800
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	14.5	0.8073
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	16.0	0.7490
AT1G65270			unknown protein		Lus10020224 [exp]	17.3	0.7762
AT2G19270			unknown protein		Lus10015539 [exp]	17.9	0.7877
AT3G15810			Protein of unknown function (D...		Lus10007118 [exp]	18.5	0.7474

Compare expression of checked genes

Lus10007092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.