Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64460 417 / 7e-149 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) AT1G58280 352 / 2e-122 Phosphoglycerate mutase family protein (.1.2.3.4) AT2G17280 350 / 2e-122 Phosphoglycerate mutase family protein (.1.2) AT1G09935 244 / 3e-81 Phosphoglycerate mutase family protein (.1) AT1G09932 197 / 2e-62 Phosphoglycerate mutase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020467 [exp] 520 / 0 AT5G64460 435 / 1e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10032819 [exp] 353 / 2e-123 AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10032821 [exp] 303 / 2e-103 AT1G58280 320 / 4e-110 Phosphoglycerate mutase family protein (.1.2.3.4) Lus10032820 [exp] 242 / 2e-80 AT2G17280 233 / 7e-77 Phosphoglycerate mutase family protein (.1.2) Lus10001381 [exp] 75 / 1e-16 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080300 [exp] 428 / 6e-153 AT5G64460 449 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.001G286000 [exp] 422 / 1e-150 AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.002G108500 [exp] 370 / 2e-129 AT5G64460 412 / 2e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.002G108600 [exp] 290 / 3e-99 AT5G64460 298 / 3e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10007093 pacid=23153233 polypeptide=Lus10007093 locus=Lus10007093.g ID=Lus10007093.BGIv1.0 annot-version=v1.0 ATGGACGGTCCAGGCTTGTTCCCGGCACATAGGTGCAAGACCATTCATTTGGTTGGTATTTTGATCTTACTCTCCAGCTATCTACTTCCTACATTGTTGG TCAGGCATGCCCAGGGAGTACACAATGTGGAGGGAGATATGAACTACAAAGCATACATGTCCCCCCAGTACTTTGACGCGGAGCTCACTCCATTGGGATG GGAACAAGTTGATAATTTGCGTAAACATGTACTTGCATCTCGTCTTTTGGACAGGGTTGAGCTGGTCATTACATCCCCTTTGATGAGGACATTACAAACA GCTGTTGGAGTTTTTGGTGGTGGCAGCTACACAGACAGGGTAGATGGGTTACCTCTTATGGTGGCAAATGCTGGAAACAGTGGCCGTGCTGCTATTTCCA GTTCCAATTCTCCTCCGATCGTTGCAGTTGAACTATGTCGTGAACATTTTGGTGTGCATCCTTGCGATCAGAGGAGAAGCGTCACTGACTATCAATTTCT CTTTCCTGCAATTGATTTTTCACTAATTGAAACAGATGAGGATACAGTGTGGAAAGCTGACGTGAGAGAGACAACTGAAGAACTTGCAGCCAGAGGGCTG AAGTTCTTGAACTGGTTATGGACAAGAAGTGAGAAGGAGATTGCAATAGTTACCCACAGTGGATTTTTGTTCCATACTTTGAACACGTTTGGAAATGACT GCCACCCGTTGGTGAAAAAGGAAATCTGCAAGCGCTTTTCAAATTGCGAATTGCGTTCGATGGTCATCGTCGACAGAAGTATGATTGGAACAGATACCTC AACAACCGACTATCCTGGAAAGACTCCTAATGAATAG
AA sequence Show only first row Show all	>Lus10007093 pacid=23153233 polypeptide=Lus10007093 locus=Lus10007093.g ID=Lus10007093.BGIv1.0 annot-version=v1.0 MDGPGLFPAHRCKTIHLVGILILLSSYLLPTLLVRHAQGVHNVEGDMNYKAYMSPQYFDAELTPLGWEQVDNLRKHVLASRLLDRVELVITSPLMRTLQT AVGVFGGGSYTDRVDGLPLMVANAGNSGRAAISSSNSPPIVAVELCREHFGVHPCDQRRSVTDYQFLFPAIDFSLIETDEDTVWKADVRETTEELAARGL KFLNWLWTRSEKEIAIVTHSGFLFHTLNTFGNDCHPLVKKEICKRFSNCELRSMVIVDRSMIGTDTSTTDYPGKTPNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	3.0	0.9020
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10021883 [exp]	5.7	0.8529
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	6.9	0.8708
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	8.7	0.8646
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	10.2	0.8633
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024319 [exp]	14.5	0.8136
AT5G45275			Major facilitator superfamily ...		Lus10033270 [exp]	15.7	0.7620
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10025970 [exp]	16.4	0.7573
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	16.4	0.8421
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	18.2	0.8523

Compare expression of checked genes

Lus10007093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.