Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64440 770 / 0 ATFAAH fatty acid amide hydrolase (.1) AT3G25660 117 / 9e-28 Amidase family protein (.1) AT1G08980 77 / 6e-15 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT5G09420 77 / 1e-14 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT5G07360 64 / 1e-10 Amidase family protein (.1.2) AT4G34880 58 / 9e-09 Amidase family protein (.1) AT3G17970 56 / 6e-08 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020468 [exp] 1111 / 0 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1) Lus10007095 [exp] 750 / 0 AT5G64440 776 / 0.0 fatty acid amide hydrolase (.1) Lus10016685 [exp] 385 / 9e-126 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10020469 [exp] 168 / 4e-48 AT5G64440 163 / 2e-46 fatty acid amide hydrolase (.1) Lus10007361 [exp] 125 / 3e-30 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020781 [exp] 120 / 2e-28 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10002805 [exp] 82 / 3e-16 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10042001 [exp] 74 / 1e-13 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 74 / 2e-13 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285900 [exp] 821 / 0 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1) Potri.005G070300 [exp] 416 / 3e-138 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 409 / 1e-135 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.018G086350 [exp] 122 / 2e-29 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.004G171000 [exp] 96 / 1e-20 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130700 [exp] 84 / 9e-17 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.001G205300 [exp] 80 / 2e-15 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.004G169400 [exp] 75 / 4e-14 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.004G171300 [exp] 72 / 4e-13 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.015G109400 [exp] 72 / 7e-13 AT5G07360 823 / 0.0 Amidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10007094 pacid=23153258 polypeptide=Lus10007094 locus=Lus10007094.g ID=Lus10007094.BGIv1.0 annot-version=v1.0 ATGGGGAATAAGAAGACAATGGTTCCTGTTTGCCAAATGGACTTGTCAACCATGAAGTATGAAACTCAAGTTGTACAAGCCCCCCATTTGACTGGGAATG TGTTTAGGTTCTTCGTAAAGCTACTCGAGTCTCCAATTCTAGGTCCTTTTCTGATGTCTCACTTGAAGAAGGAGAATAAGATGATTGAGATGTTACGATG TACAGAGATACCAGAACCGCCCATGTTCGTGCCAGAATACCCAAATCAAGAGCCGGAGAGTTATGTTGTTCCCTTGGAGGAAGATGATAAACCAGAAGGA CGAGTTGAATCAGCTTTGAAATCGCTTCCTCATTATGATCCTGCAACCTACTTGAACGTGGACTCAAGTACCCCATTTAGGCAATGGAGGATTCGCGATT ATGCACATGCGTACCGCTCTAAGCTAATAAGCCCCTCTGTGGCTGCAGAACACATCATCTCAGCTATAGAAGAGTCGCGTAAAAGTGAGCCGCATCAACC ATTATTGATTTCTTTTGATGTTGCCGATGTTCGAAAACAAGCTGCAGCTTCCACTCAAAGGATTGAGGAAGGAAATCCTATATCCATCTTGGATGGCATC TTCATTGCAGTCAAGGATGACATAGATTGCTATCCACACCCGACTAAAGGTGGAACTACTTGGTTGCACGAGGTTCGTTCTGTGAAAAGGGACGCAGTTT GTGTTTCTCGGCTGCGTAGCTGTGGGGCCATACTTGTAGGAAAAGCAAATATGCATGAATTAGGAATGGGAACAACCGGAAACAATTCGAATCATGGGAC AGTGAGAAACCCTTATGCTCCCGATAGATACACAGGTGGATCATCCTCAGGCCCGGCTGCACTTGTAGCTTCTGGAATATGTAGTGCTGCCGTAGGATCT GATGGCGGAGGCTCGGTGAGGATCCCTTCTTCCCTTTGCGGGATAGTGGGCTTGAAAACAACACATGGACGGACAGATATGGGAGGTTCACTTTGTGATG GGGGTAATGTCACAATTCTAGGACCAATTACGTCTTGTGTTGAGGATTCAATCATAGTGTATGCGGCAATGTTAGGAGCCTCCATGGCAGACAGAATTAG CGTGAGACCAGGCCGACCTTGTTTGCCAGATTTATCATCTCATGAGGGTATATCTACGTTGGGGTCAATGCGTTTGGGGAAATACACATCGTGGTTTAAT GATGTGCATTCAACTGATGTCTCTGACAAGTGTGAGGATGCTCTTAATCTACTGTCAAAAACACATGGGTGTGAAGTGGTAGAGATTGTGATACCTGAGT TGGACGAGATGCGGTGCTCCCATGTTGTATCGATTGGAGCTGATTTCCAGTCTTCATTGGCTGCTGATATCGAGGACGGGAAAGCGAAGTTGTTGACACA CGATAGCAGGACGAATGTTGTACTATTTCAATCATTTAGTGCTGCTGATTTTGTTACTTCTCAGCGACTTAGACGAAGAGCAATGCATCATTACCTGGAG GCTTTCAAAAAGGTCGACGTGATCGTAACCCCAACAACTGGCATGACAGCTCCGGTGATACCTCCTAGTGCTCTTAAATATGGAGAGACGGATATGAAGG TCACAGCTTATCTTATGCGGTTCGTGGTAGGACCGAATCTTCTTGGATTCCCTGCAATTTCAGTTCCTGTGGGTTATGATAAACAAGGGCTTCCAATAGG ATTGCAGCTGATCGGCCGTCCATGGGCCGAAGCAACTATCCTGCGCTTAGCTTTTGCAATCGAGTTTGTGCAAGGAATCACAATCGTTGATGAATTGCAA GATATCAGAATGGGTGATTGA
AA sequence Show only first row Show all	>Lus10007094 pacid=23153258 polypeptide=Lus10007094 locus=Lus10007094.g ID=Lus10007094.BGIv1.0 annot-version=v1.0 MGNKKTMVPVCQMDLSTMKYETQVVQAPHLTGNVFRFFVKLLESPILGPFLMSHLKKENKMIEMLRCTEIPEPPMFVPEYPNQEPESYVVPLEEDDKPEG RVESALKSLPHYDPATYLNVDSSTPFRQWRIRDYAHAYRSKLISPSVAAEHIISAIEESRKSEPHQPLLISFDVADVRKQAAASTQRIEEGNPISILDGI FIAVKDDIDCYPHPTKGGTTWLHEVRSVKRDAVCVSRLRSCGAILVGKANMHELGMGTTGNNSNHGTVRNPYAPDRYTGGSSSGPAALVASGICSAAVGS DGGGSVRIPSSLCGIVGLKTTHGRTDMGGSLCDGGNVTILGPITSCVEDSIIVYAAMLGASMADRISVRPGRPCLPDLSSHEGISTLGSMRLGKYTSWFN DVHSTDVSDKCEDALNLLSKTHGCEVVEIVIPELDEMRCSHVVSIGADFQSSLAADIEDGKAKLLTHDSRTNVVLFQSFSAADFVTSQRLRRRAMHHYLE AFKKVDVIVTPTTGMTAPVIPPSALKYGETDMKVTAYLMRFVVGPNLLGFPAISVPVGYDKQGLPIGLQLIGRPWAEATILRLAFAIEFVQGITIVDELQ DIRMGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007094 [exp]	0	1
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10021967 [exp]	1.4	0.8725
AT5G09230		AtSRT2, SRT2	sirtuin 2 (.1.2.3.4.5.6.7)		Lus10029531 [exp]	3.5	0.8509
AT5G62680			Major facilitator superfamily ...		Lus10036669 [exp]	4.9	0.7840
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10041260 [exp]	6.7	0.8015
AT5G64460			Phosphoglycerate mutase family...		Lus10032819 [exp]	7.9	0.7835
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	9.5	0.7994
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	11.5	0.8118
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	13.4	0.7830
AT1G61900			unknown protein		Lus10006773 [exp]	14.0	0.7893
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	15.5	0.8259

Compare expression of checked genes

Lus10007094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.