Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64440 755 / 0 ATFAAH fatty acid amide hydrolase (.1) AT3G25660 140 / 4e-35 Amidase family protein (.1) AT5G09420 88 / 6e-18 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT5G07360 83 / 3e-16 Amidase family protein (.1.2) AT1G08980 82 / 3e-16 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT3G17970 64 / 2e-10 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007094 [exp] 773 / 0 AT5G64440 795 / 0.0 fatty acid amide hydrolase (.1) Lus10020468 [exp] 753 / 0 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1) Lus10016685 [exp] 394 / 6e-128 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10020469 [exp] 292 / 4e-94 AT5G64440 163 / 2e-46 fatty acid amide hydrolase (.1) Lus10007361 [exp] 144 / 2e-36 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020781 [exp] 142 / 3e-35 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10032519 [exp] 90 / 2e-18 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10027852 [exp] 88 / 7e-18 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10043019 [exp] 88 / 7e-18 AT5G07360 858 / 0.0 Amidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285900 [exp] 845 / 0 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1) Potri.005G070300 [exp] 433 / 1e-143 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 429 / 7e-142 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.018G086350 [exp] 130 / 1e-31 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.015G109400 [exp] 99 / 3e-21 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.001G205300 [exp] 92 / 2e-19 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.004G169300 [exp] 87 / 8e-18 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.013G024200 [exp] 82 / 2e-16 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 76 / 2e-14 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.004G171000 [exp] 74 / 1e-13 AT4G34880 535 / 0.0 Amidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10007095 pacid=23153269 polypeptide=Lus10007095 locus=Lus10007095.g ID=Lus10007095.BGIv1.0 annot-version=v1.0 ATGGGAAAGCTTCGCGTGATGGTCCCCGTTGATGAGATTGACTTGTCTGCAGTCAAATACGAGGAGGAAGTGCTCAAAGCGCCACGGTTGTCTGGGGTAA GATTGATGCTGTTTTCAAGGATTCTTGAATCTGCACTCTTTGGTTCTTTGATCGTATCCCACGTGAAGAAACAGAACAAGATAATTGAGTTGTTGCAGAA CACTGATATACCTGAATCTCCCATGTTCAAACCCGAATTTCCTCCCCAAGAGCCAGAACCTGGTGTGTATATTGTTGATGAACTCGGAACCCCTGAAGAA AGGGTAGCGTCAGCCTTAAAATGTCTTCCTGATTACGATCCTGCTCACTCCTTGGATGAGATTTCAGTCACATCTTTCAGATACTGGAAGATTCGTGACT ACGCACATGCTTATCGGTCTAAGGTTGTTACGCCCTCAATGGTGGCTGAGAATATATTATTAGGTTTGAAGGATTTTGATGGGAAAAGTCCACCTTGCCC GTTGTTGATTTCTTCCGATGTTGAGGTTATAAGGAAGCAAGCTGCAGCGTCCACTCAGAGGTTCAGTGAAGGGAAAGAAATATCTGTCTTGGATGGAATT TTTGTTGCAATTAAAGATGATATAGACTGCCTTCCTCACCCAACTAAGGGTGCAACCACATGGATGAATGAGGTTCGTCCTGTGAAAGATGATGCAGTTT CTGTTTATAGGCTGCGTAGCTGTGGTGTGATATTTGTCGGGAAGGCAAACATGCATGAACTAGGCATAGGAACTACAGGGAATAATCCGACATACGGAAC TGTAAGGAACCCTCATGATCCAGAAAGATACACTGGTGGATCCTCCTCTGGCCCAGCAGCAATTGTAGCTTCAGGGTTGTGCTCTGCTGCCTTGGGGACA GATGGTGGAGGTTCGATTCGCATTCCTTCGTCCCTCTGTGGAGTCGTTGGCATGAAAACAACTTATGGACGCACGGACATGAAAGGTTCTTTGTGTGAAG GTGGGACTGTGGAAATCATCGGACCTATTGCGTCCTCTGTGGAGGATCTCATCCTAGTGTATGCAGCAATTCTTGGTTCTTCCCCTGTGGATAGAATCAG CATGCATCCGCCACCACCCTGCTTTCCAAAGTTATCAGTAAAGAAAGGTAAAGACGTGGTCGGATCATTTCGAGTGGGAAAATTCACACCGTGGTTTAAT GATGTGAAACAAACTGACGTTGTGGACAAATGCGTGGATGCTCTGTCCCTTCTGTGTAAGAACCATGGTTGCGAAATGGTGGAGATATTGATACCAGAGT TGGCAGAGACGCGGATTGCGCATCTTGCTACAGTTGGAGCTGATATGCACTCGGTTCTAAGTCCTCATCTGAATGATGGGAAAAGTGCAAGGTTGACGTA TGAGAGTCTAACTAGTGATGCATTGTTCCGATCATTCACTGGGTCCGAGTACGTTTCAGCTCAGCGTTTAAGGAGAAGGATAATGCATCATCACATGGAA ATTTTCAAAAATGTTGATGTCATTGTTACTCCTACAACTGGAACGGCAGCACCTCTAATCCCTCGCGGTGCTCTCAAGTATGGAGAGAGTGACTTGAAGA CTACAGGTTTTCTTATGCGCTTTATCATTGCACCAAATCTCATTGGCCTTCCCGCCATATCTGTTCCTGTTGGTTATGACAAGCAAGGGCTTCCCATAGG GTTGCAGCTAATCGGGCGCCCGTGGGGGGAAGCCACAATCCTTCGATTAGCTTTCGCAATCCAGGGGGTTCTGGCGGTGGCTGCTAGTAAGGAATGGCGC TTCCCTATGGATTGTAAGCGTGTCTCTAATAGGAATTGGGTCAGTCAGAGTTGGGGTATTCCGATGGACGCGAGTTTCTGCCACATTGGAGATGATGTTT GGTTGCTTGTATGTGGTTCAAAGGCCAAGGTGCCTCGACTCATCGCTCTTGATCGACGAAAGTTTGGGGAGGTCGAGAACTTGATGGACATTTTGGTTCA AAGAAGCGGATCGTTCAAACGAATAGGATGGAATCAGATGTTGTTTGGATTGTGGCCACATGTATTCGGCTCCACCTCCAATCAAAGGCTTTTGCGGTCA GTTGTTGTGTTCGGATGA
AA sequence Show only first row Show all	>Lus10007095 pacid=23153269 polypeptide=Lus10007095 locus=Lus10007095.g ID=Lus10007095.BGIv1.0 annot-version=v1.0 MGKLRVMVPVDEIDLSAVKYEEEVLKAPRLSGVRLMLFSRILESALFGSLIVSHVKKQNKIIELLQNTDIPESPMFKPEFPPQEPEPGVYIVDELGTPEE RVASALKCLPDYDPAHSLDEISVTSFRYWKIRDYAHAYRSKVVTPSMVAENILLGLKDFDGKSPPCPLLISSDVEVIRKQAAASTQRFSEGKEISVLDGI FVAIKDDIDCLPHPTKGATTWMNEVRPVKDDAVSVYRLRSCGVIFVGKANMHELGIGTTGNNPTYGTVRNPHDPERYTGGSSSGPAAIVASGLCSAALGT DGGGSIRIPSSLCGVVGMKTTYGRTDMKGSLCEGGTVEIIGPIASSVEDLILVYAAILGSSPVDRISMHPPPPCFPKLSVKKGKDVVGSFRVGKFTPWFN DVKQTDVVDKCVDALSLLCKNHGCEMVEILIPELAETRIAHLATVGADMHSVLSPHLNDGKSARLTYESLTSDALFRSFTGSEYVSAQRLRRRIMHHHME IFKNVDVIVTPTTGTAAPLIPRGALKYGESDLKTTGFLMRFIIAPNLIGLPAISVPVGYDKQGLPIGLQLIGRPWGEATILRLAFAIQGVLAVAASKEWR FPMDCKRVSNRNWVSQSWGIPMDASFCHIGDDVWLLVCGSKAKVPRLIALDRRKFGEVENLMDILVQRSGSFKRIGWNQMLFGLWPHVFGSTSNQRLLRS VVVFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	0	1
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	3.0	0.7728
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10003095 [exp]	3.7	0.7762
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	5.5	0.7518
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10007942 [exp]	5.5	0.7675
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	8.0	0.8132
AT5G27670		HTA7	histone H2A 7 (.1)		Lus10029899 [exp]	12.6	0.6796
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	13.4	0.6976
AT5G13740		ZIF1	zinc induced facilitator 1 (.1...		Lus10035765 [exp]	14.3	0.7343
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10027658 [exp]	14.4	0.7684
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10012285 [exp]	16.7	0.7078

Compare expression of checked genes

Lus10007095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.