Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65630 176 / 4e-48 GTE7 global transcription factor group E7 (.1) AT5G10550 164 / 2e-43 GTE2 global transcription factor group E2 (.1) AT1G73150 156 / 1e-41 GTE3 global transcription factor group E3 (.1) AT1G17790 152 / 5e-40 DNA-binding bromodomain-containing protein (.1) AT5G14270 129 / 2e-31 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT1G06230 124 / 1e-29 GTE4 global transcription factor group E4 (.1.2.3) AT5G63320 122 / 2e-29 NPX1 nuclear protein X1 (.1.2.3) AT3G27260 118 / 1e-27 GTE8 global transcription factor group E8 (.1.2) AT3G01770 113 / 3e-26 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT2G34900 100 / 1e-22 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034067 [exp] 875 / 0 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 553 / 0 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10010524 [exp] 380 / 6e-130 AT5G65630 110 / 1e-27 global transcription factor group E7 (.1) Lus10010525 [exp] 305 / 3e-100 AT5G65630 188 / 7e-56 global transcription factor group E7 (.1) Lus10020471 [exp] 155 / 3e-45 AT5G10550 49 / 8e-08 global transcription factor group E2 (.1) Lus10033623 [exp] 146 / 9e-37 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 146 / 1e-36 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 146 / 1e-36 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10039630 [exp] 142 / 6e-36 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285700 [exp] 558 / 0 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 544 / 0 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.013G118900 [exp] 223 / 7e-64 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 217 / 6e-62 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 147 / 5e-38 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.015G091800 [exp] 145 / 2e-36 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.012G094300 [exp] 135 / 3e-33 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.001G376400 [exp] 129 / 3e-32 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 131 / 6e-32 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.001G355300 [exp] 111 / 9e-26 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10007096 pacid=23153242 polypeptide=Lus10007096 locus=Lus10007096.g ID=Lus10007096.BGIv1.0 annot-version=v1.0 ATGGCTTCAGCTGTGCTAGCTAATCAGAGCGAACCGAGCTGGATGCAGGCACAGCCGGCCGGCGGGGCCAAGCTAATGGGCAAATACCCCTTCTCCAACT CCAACCCTAGCAACCCTAACCCTCAATTCTCTAAGAAACGGCATCTTCAGGCGTTGCCTTTCGCCGAGGTAGATGAATCTCCGGCGTTCACACAATCTGC GGCATCTGACGACGCGTCATCAATTAATCGGAAACCTAACGATTTCATCACTGGGCGATACGTCACCTTCAATGTCGCTTCGTATTCAAAGAAGGAGCTT GTGGACCTGAAGGATCGGTTGGTTGCCGAGCTTGAGCAGATCCGACAATTGGAGAGCCGCATCAATTCGTCGTCCGACTCCCAGATCAGATCCGGCTCAA ATTTTCACAACAAGAAACCAATTGGTGGTCCGAACAGCAACAAGAAGATACTGGGAAACAAGCGGCCCTTCCCTGCTACTAATTCGAGTTTTGGGGTTCA GGAATTGAAGAGATCACACAACCACCAAGATAACTCGCAATTGATGAAGAAGTGCAGCCAGATCTTGTCCAAATTAATGAAGCACAAGTACGGGCACATC TTCAACGTGCCGGTAGACATTGTTGGATTGCAGCTTCACGATTATAACGACATAATCAAACAGCCGATGGATTTGGGCACAGTGAGGAAGAAATTGGGGA AAAATCTATACATTTCGCCTCTGGATTTTGCCGCAGACGTGAGATTGACCTTCAATAATGCCATGCGGTACAATCCCAAAGGTCACGAGGTTTACGCAAT TGCAGAGGATTTTCTCTCTAGATTTGAAGGACTGTTCCATCCCATCAAGGATATGCTGGGTGATGAGGAGATCCACGAAGAAGAAGAGCTCGAGCTCGCT CAAGAAGTACAGGACAGTTCTTGGGATCATCATAACCATCACAGGGGAATGATTGAGACTGAAAGTGTAGTACCACCGAAAGAGCAAGGGGCAATGATGC AAGTTATGGCAAAATCCGAGCAAATTGGTACAAACTCGATTCCCCCACCACCTACTTCTGCATCCAGTCAAAACCCTAATCCTCCTCAATCAACATCTCA ACAATTGCCTGTGAGGACGCCATCTCCGAGGCGTGCTCCACAAGTGAAGCCTGTGAAGCTTCCGAAGCCAAAGGCAAAAGATCCTAATAAGAGGGAGATG AGTCTGGAAGAGAAGCACAAATTAGGAGTAGGTCTGCAGAGCATGCCTCCGGAGAAGATGGACCAAGTGGTTCAAATAATAAGGAAGAGGAATGGGCATT TGAGGCAGGACGGGGATGAGATTGAGCTTGATATTGAAGCAGTAGACACAGAGACTCTTTGGGAACTTGATCGATTCGTCACTAATTACAAAAAAATGGT AAGCAAGCTTAGGCGTCAAGCACTGATTCTCCCTAACATTGGGGGAACTGAAGGCAACAAGGATGTGCCCGCTAGTGAGAGAATTGATGTTGTAACCGAG TCGAAGAAGCCGAAGAAAGGAGGTGATGCAGGGGAAGAAGATGTGGACATTGGCGATGAAATGCCAATGAGCAGCTTTCCGCCAGTGGAGATCGAGAAGG ACAACAACAACGGTGGTCATGCGAGCAGCAGTTCTAGCAGCTCGAGTAGTTCCAGCGATGATTCCTCTTCATCCAGTGATTCTGACTCAGGAAGCTCTTC TGGGAGTGATTCGGAGGATGCTCACTCGTAG
AA sequence Show only first row Show all	>Lus10007096 pacid=23153242 polypeptide=Lus10007096 locus=Lus10007096.g ID=Lus10007096.BGIv1.0 annot-version=v1.0 MASAVLANQSEPSWMQAQPAGGAKLMGKYPFSNSNPSNPNPQFSKKRHLQALPFAEVDESPAFTQSAASDDASSINRKPNDFITGRYVTFNVASYSKKEL VDLKDRLVAELEQIRQLESRINSSSDSQIRSGSNFHNKKPIGGPNSNKKILGNKRPFPATNSSFGVQELKRSHNHQDNSQLMKKCSQILSKLMKHKYGHI FNVPVDIVGLQLHDYNDIIKQPMDLGTVRKKLGKNLYISPLDFAADVRLTFNNAMRYNPKGHEVYAIAEDFLSRFEGLFHPIKDMLGDEEIHEEEELELA QEVQDSSWDHHNHHRGMIETESVVPPKEQGAMMQVMAKSEQIGTNSIPPPPTSASSQNPNPPQSTSQQLPVRTPSPRRAPQVKPVKLPKPKAKDPNKREM SLEEKHKLGVGLQSMPPEKMDQVVQIIRKRNGHLRQDGDEIELDIEAVDTETLWELDRFVTNYKKMVSKLRRQALILPNIGGTEGNKDVPASERIDVVTE SKKPKKGGDAGEEDVDIGDEMPMSSFPPVEIEKDNNNGGHASSSSSSSSSSSDDSSSSSDSDSGSSSGSDSEDAHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06230		GTE4	global transcription factor gr...		Lus10007096 [exp]	0	1
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10020489 [exp]	1.7	0.7585
AT5G58300			Leucine-rich repeat protein ki...		Lus10034446 [exp]	2.0	0.7566
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	4.0	0.7842
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	7.5	0.7364
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	11.0	0.7360
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	17.5	0.7618
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	20.5	0.7269
AT4G26455		WIP1	WPP domain interacting protein...		Lus10027087 [exp]	23.7	0.6665
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	30.7	0.7393
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	38.0	0.7392

Compare expression of checked genes

Lus10007096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.