Plant FIBer expression Database

Lus10007099 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G09580 254 / 3e-80 unknown protein
AT1G53345 110 / 9e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020476
[exp]
442 / 3e-154 AT5G09580 415 / 1e-144 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G285000
[exp]
266 / 6e-85 AT5G09580 412 / 1e-143 unknown protein
Potri.015G030300
[exp]
113 / 9e-28 AT1G53345 433 / 4e-153 unknown protein
PFAM info
Representative CDS sequence
>Lus10007099 pacid=23153257 polypeptide=Lus10007099 locus=Lus10007099.g ID=Lus10007099.BGIv1.0 annot-version=v1.0
ATGGCTATCCCGCGTCTCCTCACAAAACTGAACCTGGTGCCCTTATGCTTCTCGCCGGGCGGACATCGAGGATTCCGATCAGACGCTGCTCTGGAGGCAC
TTGCTAAGGCAAGAGAAGACGGCATTCCCAATCTCATCCTCTACAATTATCCATCTTTCTCAGGAGCTTTCTCGGCTCTGTTTGCTCACCTCTTCCACTC
TCGCCTCCGCCTCCCTTTCCTCGTCTTGCCTTTCTCCGCCTCCGTTCCCCTCAGGGTTGAAGATTTGTGCATAGAAGGGCTCCAGCGGTGCTATCTACTT
GATTTCATTGGTTCACGCGGATTCGCTGCTGAAATTTCGCGGCAGTCAATGTGCGAAGTGATTGCTTTTGATCACCGGAAGTCGACACTTGCACAAGTTC
CTTCTCCGCAGGATAATCTAGAGAATGTTAGATACCATGTTGATCTTGAGAGGAGCAGCTCCAGAGCAGCGTACAACTACTTTGCCGACAGGCTTGCCGG
AGAGTGTAAATTGTCTCATGAAGGTGTTGGGAGATTATTGAACCCAGAAGACCAAGGCCGTGTTGAAGCTGTTTTGAGCTATATTGAAGATAGCGATCTT
CAACGATGGAGCTTACCGGACTATAAAGCTTTTAGAATAGGTATCAGTGAGTGGAGGCAGAGGATCAATTGCATCACTAATCCCTACATATTTGAAGAGT
TCTCGATTTTTCCTGGTTGGGGTGGAAAGGGTAACAAAGGTTCTGACTCATTCAGTGATTGCACAGCTGGTCGGGGGATCATTTATATAACTCTGGTTGT
TGGAACTTGTGATACTTATCGTCAAGAAATATTTCCAAGGCCATATAAGAAACGAAAACGAAACAAAAGTAGCTCCTGCCATGTTTTGTGGTTTTCATCT
TTCAGTGAATTGCAGTTGATCGCTTCATTGTTTGAGATGAACTCTGCTGATATAATTGCGAAAGGGAATTCACATATTTCGTTTCAGCGAGATGCTGCCA
AAAAGCTGCTGAATAAGGTTTACAAAGTACGACTTGGCCGAGGATTTTATGGGGAATGCCTGGGAGTCAGAGTTGATGGAAATTCTAAGTTGAGTGGACT
GGTTGGCAAAGAACTTAGTGCTAGAAGTGCTGCAGCTGGGCTGAGGCCGATTGGAGCAGTCATCTACATGCACAGGAACAATCTTAAGATGTGCTTGAGG
AGCATTGATGCTTCTACTGATACCTCTGAGGTTGCAAAGGCATACGGTGGAGGTGGTACACCTAGTTCCAGTTCCTTCATGATAAGAATGGACGAATACA
ATCAATGGCTGTCAACTGATTATGGTTCAGGATTCAATCGTTTCATGCAGATGTCGGCAACTTATGTGAAAATACAGAAGGCCAGAGGAAAGGCCTATTG
A
AA sequence
>Lus10007099 pacid=23153257 polypeptide=Lus10007099 locus=Lus10007099.g ID=Lus10007099.BGIv1.0 annot-version=v1.0
MAIPRLLTKLNLVPLCFSPGGHRGFRSDAALEALAKAREDGIPNLILYNYPSFSGAFSALFAHLFHSRLRLPFLVLPFSASVPLRVEDLCIEGLQRCYLL
DFIGSRGFAAEISRQSMCEVIAFDHRKSTLAQVPSPQDNLENVRYHVDLERSSSRAAYNYFADRLAGECKLSHEGVGRLLNPEDQGRVEAVLSYIEDSDL
QRWSLPDYKAFRIGISEWRQRINCITNPYIFEEFSIFPGWGGKGNKGSDSFSDCTAGRGIIYITLVVGTCDTYRQEIFPRPYKKRKRNKSSSCHVLWFSS
FSELQLIASLFEMNSADIIAKGNSHISFQRDAAKKLLNKVYKVRLGRGFYGECLGVRVDGNSKLSGLVGKELSARSAAAGLRPIGAVIYMHRNNLKMCLR
SIDASTDTSEVAKAYGGGGTPSSSSFMIRMDEYNQWLSTDYGSGFNRFMQMSATYVKIQKARGKAY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G09580 unknown protein Lus10007099
[exp]
0 1
AT2G17510 EMB2763 EMBRYO DEFECTIVE 2763, ribonuc... Lus10029500
[exp]
14.1 0.8465
AT2G02560 TIP120, HVE, ET... HEMIVENATA, CULLIN-ASSOCIATED ... Lus10042409
[exp]
16.7 0.8299
AT1G63810 unknown protein Lus10026014
[exp]
19.9 0.8462
AT3G30300 O-fucosyltransferase family pr... Lus10034356
[exp]
24.2 0.8238
AT3G11964 RNA binding;RNA binding (.1) Lus10016216
[exp]
24.7 0.8401
AT4G39680 SAP domain-containing protein ... Lus10019680
[exp]
29.1 0.8209
AT1G13040 Pentatricopeptide repeat (PPR-... Lus10036129
[exp]
34.6 0.7812
AT1G07910 ATRNL, RNL, AtR... ARABIDOPSIS THALIANA RNA LIGAS... Lus10037788
[exp]
36.5 0.8275
AT5G10010 unknown protein Lus10005778
[exp]
39.1 0.8298
AT3G18020 Pentatricopeptide repeat (PPR)... Lus10024513
[exp]
39.1 0.8288

Lus10007099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.