Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31220 226 / 8e-70 bHLH bHLH010 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31210 216 / 3e-66 bHLH bHLH091 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G06170 201 / 2e-60 bHLH bHLH149 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31215 72 / 3e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 66 / 1e-11 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 63 / 1e-10 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT2G28160 62 / 2e-10 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT1G12860 62 / 3e-10 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57150 60 / 3e-10 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G26744 61 / 9e-10 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020478 [exp] 541 / 0 AT2G31220 271 / 3e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004575 [exp] 63 / 2e-10 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 63 / 2e-10 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 61 / 2e-10 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10006951 [exp] 61 / 2e-10 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10004574 [exp] 62 / 3e-10 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10042572 [exp] 59 / 3e-10 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005999 [exp] 61 / 6e-10 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 61 / 7e-10 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068500 [exp] 278 / 9e-90 AT2G31220 253 / 7e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G202100 [exp] 270 / 8e-87 AT2G31220 252 / 8e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G023800 [exp] 125 / 7e-34 AT1G06170 125 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G147300 [exp] 64 / 5e-11 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 64 / 5e-11 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G105200 [exp] 64 / 5e-11 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.012G106000 [exp] 64 / 6e-11 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.014G099700 [exp] 64 / 9e-11 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G176900 [exp] 62 / 3e-10 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G172101 [exp] 61 / 7e-10 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007101 pacid=23153243 polypeptide=Lus10007101 locus=Lus10007101.g ID=Lus10007101.BGIv1.0 annot-version=v1.0 ATGCTTAACGATCCTCCACCACTGCCGCCTCCTTACCCTCCCTCCACTCCCGATCTCAACCTCTTCAACTTGCCTATGTCCTCTCTCCTTCCCAATTCCT CAATCTCATTCGCCAACAACAACAACCCCAAACCTCCCATGGGCGGCGGCGGCGGAGGAGGAGGATACGGCAGCTGGGACCTTCCGATTTCTGACGGAGC TCAGTCGCCGTCTTCCGTACACTACGACCCGCTCTCCTACCTCAACCTCCCACCTCAGCCGCCTCTGTTCAGGGAGCTCTTCCAGTATCTCCCCTCCCAC GGCGGCGGTAATTCTCTGCTCGGAGGCGGAGGACTCGTTGATATCCACGGCGGCGAAGGAAGCAGCGGAGGAGGTGGTGGGATTTACCCCGACGGAGACG GCTCGTCGTCTCAACAGCTGGACAGTAGCGTCCTGGAGTTCAATTGGGACATGGCTTGTCTCGCCAAAGGAAGAGCTGCCGGAAGAATGGCGAAACCCTT GACCACCGAGCGGCAGAGGAGACAACAGGTCAACGATAAATTCTCCGCTCTCAGAAGCCTCATCCCCAATCCTACCAAGAACGATAAGGCGTCGGTGGTG GGAGACGCGATAGGGTACATCAAGGAGTTGTTGGGGACAGTGGAGGAGCTGAAATTGCTGGTGGAGAAGAAGAGGTGCAGTAGATGGAGGAGCAAGAGGA ACAAGACTGATCATCAACAGAACGGCGACATTGATGGAGGAGCCGCCATGAATGAGGGTTCGGAGATGAAAGCGGCGAATTCAAATGGCAGTGGAGGACA CGGTACGGATCAGCTGGACAAATCCTGTAATGGGTCGACACTGAGGAGCTCCTGGCTGCAGAGGAAGTCCAAGGATACCGAGATTGATGTGAGGATTATT GAAGACGAGGTGACGATCAAATTGGTTCAGAGGAAGAAGATCAATTGCTTGCTGTTTGTTTCCAAGGTTCTTGATGAGCTGCATTTGGATCTTCACCATG TTGCTGGAGGGCACGTTGGTGACTATTACAGCTTCCTCTTCAATACCAAGATATGTGAAGGGTCTTCAGTGTATGCAAGCGCCATAGCCAACAAGCTGAT TGAGGTTGTGGACAAACAGTATGCTTCAACTCCATCCATCAGTTGTTACTGA
AA sequence Show only first row Show all	>Lus10007101 pacid=23153243 polypeptide=Lus10007101 locus=Lus10007101.g ID=Lus10007101.BGIv1.0 annot-version=v1.0 MLNDPPPLPPPYPPSTPDLNLFNLPMSSLLPNSSISFANNNNPKPPMGGGGGGGGYGSWDLPISDGAQSPSSVHYDPLSYLNLPPQPPLFRELFQYLPSH GGGNSLLGGGGLVDIHGGEGSSGGGGGIYPDGDGSSSQQLDSSVLEFNWDMACLAKGRAAGRMAKPLTTERQRRQQVNDKFSALRSLIPNPTKNDKASVV GDAIGYIKELLGTVEELKLLVEKKRCSRWRSKRNKTDHQQNGDIDGGAAMNEGSEMKAANSNGSGGHGTDQLDKSCNGSTLRSSWLQRKSKDTEIDVRII EDEVTIKLVQRKKINCLLFVSKVLDELHLDLHHVAGGHVGDYYSFLFNTKICEGSSVYASAIANKLIEVVDKQYASTPSISCY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10007101 [exp]	0	1
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	6.6	0.8861
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	7.2	0.8718
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	7.4	0.8661
AT2G25270			unknown protein		Lus10001945 [exp]	12.0	0.8688
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	13.0	0.8550
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	13.7	0.8569
AT5G67200			Leucine-rich repeat protein ki...		Lus10036426 [exp]	15.4	0.8683
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	16.3	0.8512
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	16.7	0.8606
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	18.7	0.8634

Compare expression of checked genes

Lus10007101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.