Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04850 751 / 0 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT4G00630 201 / 4e-54 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 194 / 8e-52 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT5G51710 54 / 2e-07 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020485 [exp] 676 / 0 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020484 [exp] 370 / 1e-124 AT4G04850 286 / 1e-91 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10017823 [exp] 182 / 4e-48 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10018844 [exp] 159 / 4e-40 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040938 [exp] 144 / 7e-36 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009830 [exp] 84 / 2e-16 AT4G00630 838 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009829 [exp] 69 / 2e-12 AT4G00630 372 / 3e-121 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10031687 [exp] 51 / 2e-06 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10040549 [exp] 49 / 8e-06 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080800 [exp] 790 / 0 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.014G080800 [exp] 193 / 9e-52 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 189 / 3e-50 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.012G130500 [exp] 50 / 3e-06 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 50 / 5e-06 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02254 [flax] [poplar] TrkA_N TrkA-N domain CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10007104 pacid=23153255 polypeptide=Lus10007104 locus=Lus10007104.g ID=Lus10007104.BGIv1.0 annot-version=v1.0 ATGAAGAAATTGAATGCAGTTGGATGCAGGATAAGTCATTACTCTTTTACATATTCAACCAGAGTCCTCCAACACAACAAGACCGTCTTGACGACTACTT CAGCACCAACTAGAGGAGGAGGATTCTATCTTTTTAAACAAAAACTAAACCCGGGGGAGAGAACTCGTACACATTCGACAAGTGAGCTTGCTGGTGCTGT AGAAGTTATCAACGATCTGGGATTGGATACATTGACTTTCTTGGCTGTTACTGTTGTTGTTGTCCCTGTGTTCAGGATCATTAAAGCTAGCCCAATACTT GGTTTCTTTTTTGCTGGGATTGTACTCAATCAGTTTGGCTTCATCAGAAATCTAACAGATGTTAAAGTTCTTTCAGAATGGGGAATTCTGTTCTTGCTGT TTGAAATGGGTTTAGAGCTCTCACTTGCACGACTTAAAGCCCTAGCAAAATTTGCCTTTGGCATGGGATTGACTCAGGTTGTTCTATCCACTCTTGCTTT CACAGCATTTGAGCTTCCACCTAATGGGGCTGTTGGAACAAAAATTCTGCAGTTCCTTTTTCACTCACGGGATGATTTGGTGAATATCAGAAGCATTGAT GAGGCTATTGTTATTGGTGCAGCTCTCTCTCTGTCTTCTTCTGCCTTTGTTCTTCAGCTTCTTGCAGAAAAAGGTGAGCTGCCTACGAGGTTTGGTTCAG CAACTTTGGGGATACTTCTTTTACAGGATATAGCAGTAGTTCCTCTTTTAGTCATACTGCCTGTCCTAGAGAGCCAGGTTGTTGCAGAAGCAAGAAGCTC AGAGGCCTTTGTTGCTCTCTGCCTGCTGACAGTTGCTGGGACTTCTCTTATTACTCAGAAGTTGGGCTTCAGTGACACGCTTGGTGCATTTTTAGCTGGG GCATTATTGGCAGAAACAAATTTCCGTACACAGATTGAAGCTGACATACGACCATTCAGGGGGTTGCTTCTTGGATTATTTTTTGTAACGACAGGAACTT CTGTGGACACTCAGCTGCTTTTACGAGAATGGCCAAATGTACTGTCACTCCTGGGGGGATTAATTGTGATCAAGACACTGATTATAACAGCTATAGGTCC TCGAGTTGGACTCACTTTGCAAGAGAGTGTAAGAATCGGGTTGCTGCTATCACAGGGTGGAGAGTTTGCTTTTGTTGTCTTTTCTCTGGCTAACAGACTG GGAGTGCTACCACTTGAGCTCAACAAACTTCTTATAATCGTCGTCGTGTTGTCAATGGCATTAACCCCGTTTCTTAATGAACTTGGAAGAAGAGCTGCTC GGTTTATTGAAGACAAGTCTGATGCAGAAGAAAAAGTGGCTGAGCCAGTCAACTTTGAAGGCAGTGAGCCTGTTGTCATCCTTGGATTTGGACAGATGGG CCAGGTGTTGGCAAACTTCTTGTCCACTCCGTTTACTTCAGGAGTGGATGGTGACGCAGCGGTGGGAATGCCTTTCATAGCTTTCGATCTGAACCCATCC GTGGTACAGGCATCTCGAAAACTTGGTTTCCCAATTATATATGGGGATGGATCACGCCCTGAAGTACTCCGAACGGCTGGCTTCTCTGCACCTAAAGCTG TCATAGTTACTTACACTGGAAAGAAAAGGACACTTGAGGCTGTACAGAGGCTTCGACTTGCATTTCCTGGGATTCCGATATATGCTAGAGCTCAGAACAT TATGCATCTTTTGGATCTGAAGAAAGGTGGTGCTACAGATGCCATTCTAGAGAATGCAGAGACTAGTTTACAACTCGGGTCGAAGCTATTGAAAGGACTT GGAGTCATGTCTGATGACGTGAACTTTTTAAGCCAACTGGTTCGAGATTCTATGGAGTTGCAAGCTCAAGAAGCACTGGATAAAACTGATGAATCAGACA TGGGTATCATGAAGCCATTACAGGTACAAACTTTCAAAGAACAAAAAATTGTGATTAAATTAAAACTGAACAAAGTATATTTTACTGAATGA
AA sequence Show only first row Show all	>Lus10007104 pacid=23153255 polypeptide=Lus10007104 locus=Lus10007104.g ID=Lus10007104.BGIv1.0 annot-version=v1.0 MKKLNAVGCRISHYSFTYSTRVLQHNKTVLTTTSAPTRGGGFYLFKQKLNPGERTRTHSTSELAGAVEVINDLGLDTLTFLAVTVVVVPVFRIIKASPIL GFFFAGIVLNQFGFIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTKILQFLFHSRDDLVNIRSID EAIVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAG ALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSVDTQLLLREWPNVLSLLGGLIVIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRL GVLPLELNKLLIIVVVLSMALTPFLNELGRRAARFIEDKSDAEEKVAEPVNFEGSEPVVILGFGQMGQVLANFLSTPFTSGVDGDAAVGMPFIAFDLNPS VVQASRKLGFPIIYGDGSRPEVLRTAGFSAPKAVIVTYTGKKRTLEAVQRLRLAFPGIPIYARAQNIMHLLDLKKGGATDAILENAETSLQLGSKLLKGL GVMSDDVNFLSQLVRDSMELQAQEALDKTDESDMGIMKPLQVQTFKEQKIVIKLKLNKVYFTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	0	1
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	1.0	0.9604
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	2.4	0.9230
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000218 [exp]	4.2	0.9044
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10027434 [exp]	4.2	0.8740
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000214 [exp]	5.3	0.9020
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10029678 [exp]	7.1	0.8963
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	8.0	0.8818
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10042718 [exp]	10.6	0.8864
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10038201 [exp]	11.1	0.8186
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10038202 [exp]	11.3	0.8455

Compare expression of checked genes

Lus10007104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.