Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04800 245 / 1e-83 ATMSRB3 methionine sulfoxide reductase B3 (.1) AT4G21860 246 / 2e-83 MSRB2 methionine sulfoxide reductase B 2 (.1.2.3) AT4G04830 229 / 1e-77 ATMSRB5 methionine sulfoxide reductase B5 (.1.2) AT4G04810 217 / 5e-73 ATMSRB4 methionine sulfoxide reductase B4 (.1) AT4G21840 217 / 6e-73 ATMSRB8 methionine sulfoxide reductase B8 (.1) AT4G21830 216 / 2e-72 ATMSRB7 methionine sulfoxide reductase B7 (.1.2) AT4G21850 208 / 2e-69 ATMSRB9 methionine sulfoxide reductase B9 (.1.2) AT4G04840 197 / 5e-65 ATMSRB6 methionine sulfoxide reductase B6 (.1) AT1G53670 108 / 3e-29 MSRB1, ATMSRB1 methionine sulfoxide reductase B 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020486 [exp] 362 / 4e-129 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Lus10009574 [exp] 243 / 3e-83 AT4G04830 225 / 2e-77 methionine sulfoxide reductase B5 (.1.2) Lus10007106 [exp] 177 / 7e-54 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10013727 [exp] 108 / 3e-29 AT1G53670 253 / 2e-86 methionine sulfoxide reductase B 1 (.1.2) Lus10005593 [exp] 105 / 4e-28 AT1G53670 246 / 1e-83 methionine sulfoxide reductase B 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080700 [exp] 262 / 1e-89 AT4G21860 253 / 7e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.001G286500 [exp] 257 / 9e-88 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.008G198600 [exp] 226 / 2e-76 AT4G04830 221 / 1e-75 methionine sulfoxide reductase B5 (.1.2) Potri.011G114300 [exp] 98 / 2e-25 AT1G53670 231 / 7e-78 methionine sulfoxide reductase B 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0080 [flax] [poplar] Beta-tent PF01641 [flax] [poplar] SelR SelR domain
Representative CDS sequence Show only first row Show all	>Lus10007105 pacid=23153241 polypeptide=Lus10007105 locus=Lus10007105.g ID=Lus10007105.BGIv1.0 annot-version=v1.0 ATGCTCAAAACCTCTCCAATTGCATCCTCCGCCAACACCCTTCTCTTTCATCCAACCACTATTCCTACTAACCCTCCTCTTTACACCGTCACCCATTCCA GGTCGTTGCAATCGCAATCCAAAGTTTCTCGCTTTGTATACTTCTCCCCTTTTGCTAAGTCTTCGTCCTTTGTCTCCTCCAAGCGTAGCTTTCGTGTCAG TCGGATTGTAGCCATGTCGGCTCCCGGGTCGGTCCAGAAGTCTGATGAAGAGTGGCGCGCCGTCCTTTCGCCTGAACAGTTCAGGATTTTGAGGCTTAAA GGCACCGAGTATCCTGGTACGGGGCAGTACGACAAGTTCTACGAGGAGGGAGTCTACAGCTGTGCAGGATGCGGGACTCCGCTGTACAAATCAACCACAA AGTTCAATTCTGGTTGTGGCTGGCCTGCTTTCTTTGATGGTATTCCTGGAGCCATAAACCGCCATGCTGACCCAGATGGCCGGAGAATTGAGATAACATG TGCAGCTTGTGGAGGCCATCTGGGTCATGTCTTTAAAGGGGAAGGGTTTAAGACACCCACCGATGAACGACACTGTGTCAACAGCGTATCACTCAAGTTT GCTCCTGGCAATGCTTCCACTTGA
AA sequence Show only first row Show all	>Lus10007105 pacid=23153241 polypeptide=Lus10007105 locus=Lus10007105.g ID=Lus10007105.BGIv1.0 annot-version=v1.0 MLKTSPIASSANTLLFHPTTIPTNPPLYTVTHSRSLQSQSKVSRFVYFSPFAKSSSFVSSKRSFRVSRIVAMSAPGSVQKSDEEWRAVLSPEQFRILRLK GTEYPGTGQYDKFYEEGVYSCAGCGTPLYKSTTKFNSGCGWPAFFDGIPGAINRHADPDGRRIEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSLKF APGNAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10007105 [exp]	0	1
AT2G27830			unknown protein		Lus10020544 [exp]	2.0	0.7922
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	8.2	0.7726
AT4G09620			Mitochondrial transcription te...		Lus10028701 [exp]	10.0	0.7823
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10019314 [exp]	11.2	0.7240
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	14.9	0.7763
AT2G20495			unknown protein		Lus10022916 [exp]	16.9	0.7344
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10008281 [exp]	23.1	0.7691
AT3G14470			NB-ARC domain-containing disea...		Lus10000417 [exp]	23.5	0.7189
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10014019 [exp]	25.1	0.7488
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10030874 [exp]	30.5	0.7057

Compare expression of checked genes

Lus10007105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.