Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09630 100 / 4e-23 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 95 / 2e-21 zinc ion binding (.1.2) AT4G37880 92 / 2e-20 LisH/CRA/RING-U-box domains-containing protein (.1) AT4G21860 46 / 1e-05 MSRB2 methionine sulfoxide reductase B 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007105 [exp] 216 / 5e-69 AT4G21860 251 / 2e-85 methionine sulfoxide reductase B 2 (.1.2.3) Lus10020487 [exp] 192 / 3e-57 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10020486 [exp] 176 / 1e-53 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Lus10019837 [exp] 106 / 1e-25 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10002832 [exp] 94 / 4e-21 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10027883 [exp] 93 / 1e-20 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 92 / 1e-20 AT2G22690 382 / 2e-132 zinc ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080500 [exp] 143 / 6e-39 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 139 / 2e-37 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.015G128600 [exp] 121 / 6e-31 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 115 / 1e-28 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286500 [exp] 46 / 1e-05 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.009G080700 [exp] 44 / 6e-05 AT4G21860 253 / 7e-86 methionine sulfoxide reductase B 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007106 pacid=23153256 polypeptide=Lus10007106 locus=Lus10007106.g ID=Lus10007106.BGIv1.0 annot-version=v1.0 ATGGATCAACTTAGGTGGTTTCAAGGAATCATACTCGGTGCCTTTAAGCCTCAAAATCCTGAACTGTTCAGGCGAAAGGACGGCGCGCCACTCTTCATCA GACTTCTGGACCGACCCGGGAGCCGACATGGCTACAATCCGACTGACACGAAAGCTACGCTTGGAGGAGACAAAGGACGAAGACTTAGCAAAAGGGGAGA AGTATACAAAGCGAGAAACTTTGGATTGCGATTGCAACGACCTGGAATGGGTGACGGTGTAAAGAGGAGGGTTAGTAGGAATAGTGGTTGGATGAAAGAG AAGGGTGTTGGCGGAGGATGCAATTGGAGAGGTTTTGAGCATGCTGCGCATTTTCTATTTGCAAGGATTCTGTGCTGTAGAGATAAAGGAGATGAGACAA AAGGCTGGCAAGCAGTCCACCAGTCTGGATTGGGGATGGATTTATCGATGACGAAGGATTCCTTTAATCATATCGGTAAGAAGCGGAAGTCCCTAGAATT AATTGATCCAGTGAGCCTCGAAGTCGAGTTAAAGCTACAACAGATTCAATCAGTTCACAATCTTATTCTTCCTGACGATCAGAAAGCCATCCTCAGGCAG CTCAAACATAGGCTTAACACAATGAGACCACTCTCCCTATTAGAGGCGCCGCAGAAGGAATTGGGTATGAGCCTTTCGAAGTACCCAAAGCTCTTAGAGA AGTCGTGGAATCCCGACATATCCAAAGCTTACAGAAGTCTTGAGTTTGATTTCCACATAATCAACCAGGATGATTTGGCCGATGAGTTTAGTCAGGATTT CCACAAGGTTATGGGACAGTGCTATAAGGACCCTTTATCTGCAGCTATTGCAGCTGGTATTGAAGGACTCCCTACTCTGTTGAAGCTGGCTAATGCAATG TCTGTGAAGAATCAGGAATGGAAAGCGTTGAAGCAGCTGCCAGTGCCGGTGGAACAAAGCAGAGATTTCCAGTTTCATTCGATATTCGTTTGTCCGGTGA GTAGGGAGGAAAGTAGTGAAGAGAATCCACCTATGATGATGCCATGCCTGCATGTTCTGTGCAAGAAGTCGATAATAAAGCTCTCAAAAAACAGCTTGAG GTCGTTTAAGTGCCCATATTGTCCAGCAGAGGCTACAGTTGCATGA
AA sequence Show only first row Show all	>Lus10007106 pacid=23153256 polypeptide=Lus10007106 locus=Lus10007106.g ID=Lus10007106.BGIv1.0 annot-version=v1.0 MDQLRWFQGIILGAFKPQNPELFRRKDGAPLFIRLLDRPGSRHGYNPTDTKATLGGDKGRRLSKRGEVYKARNFGLRLQRPGMGDGVKRRVSRNSGWMKE KGVGGGCNWRGFEHAAHFLFARILCCRDKGDETKGWQAVHQSGLGMDLSMTKDSFNHIGKKRKSLELIDPVSLEVELKLQQIQSVHNLILPDDQKAILRQ LKHRLNTMRPLSLLEAPQKELGMSLSKYPKLLEKSWNPDISKAYRSLEFDFHIINQDDLADEFSQDFHKVMGQCYKDPLSAAIAAGIEGLPTLLKLANAM SVKNQEWKALKQLPVPVEQSRDFQFHSIFVCPVSREESSEENPPMMMPCLHVLCKKSIIKLSKNSLRSFKCPYCPAEATVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	0	1
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	1.4	0.8630
					Lus10004960 [exp]	2.8	0.8498
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10018237 [exp]	3.2	0.8360
AT3G53220			Thioredoxin superfamily protei...		Lus10026540 [exp]	3.5	0.8382
					Lus10043270 [exp]	4.5	0.8520
AT3G55640			Mitochondrial substrate carrie...		Lus10040257 [exp]	5.2	0.8376
AT1G60400			F-box/RNI-like superfamily pro...		Lus10023039 [exp]	6.3	0.8181
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	6.5	0.8520
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	7.1	0.7813
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10014331 [exp]	8.7	0.8220

Compare expression of checked genes

Lus10007106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.