Plant FIBer expression Database

Lus10007107 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64480 102 / 1e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020488
[exp]
244 / 2e-83 AT5G64480 92 / 9e-24 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G080400
[exp]
144 / 3e-44 AT5G64480 106 / 2e-29 unknown protein
Potri.001G286200
[exp]
139 / 2e-42 AT5G64480 111 / 2e-31 unknown protein
PFAM info
Representative CDS sequence
>Lus10007107 pacid=23153217 polypeptide=Lus10007107 locus=Lus10007107.g ID=Lus10007107.BGIv1.0 annot-version=v1.0
ATGGCTTCTCGAATCCATCAATCTCTTCCAACCCCTCTCTTCCAACCAGTAAAGATCCAAACTTTCGCCATTCCCAGGGCTACCCAGTTCCCCTACAACA
GCAGACCCAGAAGAACCCGAATCCTGTGCGCAAGCACGAAAAAGAGCGCAGCCGAAAATTCAAATCTGGCCACAGATTTCGCGAAGCAAGTGTCCAGGAT
AAACACCAATGTTACACAGCGAGAAGATGCCATGAAGAAGAGTAGGGAAATGCTGTTCTGCGAGCTTTGCAAGTTCTTGGATTTGGAGGAAGACGAGGTG
GAAATGAGATGGGACGAAATGAATCAAGACGAGAAGACGGCGTTGGTTAAAGGGTTTGTGGATGAGTGGGGTGCCAATTTTCACCCATTGTCATCTAGGT
CAGTTGAGGAATTGATTGAAGAGCATATACAGGAAAAGAAGAAGAAGAAGGAGCTGTCATGGTCGTCTTCTGAGTTATCTTCTTCTGCTTTCTTTCCTGG
ATTGAGGAGATTAATGGGATTTGCTACAGAATAA
AA sequence
>Lus10007107 pacid=23153217 polypeptide=Lus10007107 locus=Lus10007107.g ID=Lus10007107.BGIv1.0 annot-version=v1.0
MASRIHQSLPTPLFQPVKIQTFAIPRATQFPYNSRPRRTRILCASTKKSAAENSNLATDFAKQVSRINTNVTQREDAMKKSREMLFCELCKFLDLEEDEV
EMRWDEMNQDEKTALVKGFVDEWGANFHPLSSRSVEELIEEHIQEKKKKKELSWSSSELSSSAFFPGLRRLMGFATE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64480 unknown protein Lus10007107
[exp]
0 1
AT5G35100 Cyclophilin-like peptidyl-prol... Lus10040007
[exp]
3.2 0.9099
AT4G09010 TL29, APX4 thylakoid lumen 29, ascorbate ... Lus10020942
[exp]
4.2 0.9265
AT3G27690 LHCB2.3, LHCB2:... LIGHT-HARVESTING CHLOROPHYLL B... Lus10001741
[exp]
5.2 0.9189
AT4G09040 RNA-binding (RRM/RBD/RNP motif... Lus10008721
[exp]
6.2 0.9212
AT5G52970 thylakoid lumen 15.0 kDa prote... Lus10023013
[exp]
6.5 0.9084
AT5G35100 Cyclophilin-like peptidyl-prol... Lus10040008
[exp]
7.7 0.8933
AT5G56550 ATOXS3 oxidative stress 3 (.1) Lus10043039
[exp]
13.5 0.8540
AT4G19100 PAM68 photosynthesis affected mutant... Lus10012152
[exp]
14.4 0.9184
AT5G02160 unknown protein Lus10024373
[exp]
15.8 0.8986
AT5G10770 Eukaryotic aspartyl protease f... Lus10026243
[exp]
25.3 0.8251

Lus10007107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.