Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64470 547 / 0 TBL12 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) AT2G14530 302 / 1e-99 TBL13 TRICHOME BIREFRINGENCE-LIKE 13 (.1) AT5G20590 181 / 4e-52 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 177 / 6e-51 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G12060 172 / 2e-48 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 168 / 8e-47 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06230 160 / 2e-45 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G06700 164 / 3e-45 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G11570 161 / 3e-45 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G19160 159 / 4e-44 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020489 [exp] 724 / 0 AT5G64470 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Lus10012477 [exp] 317 / 1e-105 AT2G14530 558 / 0.0 TRICHOME BIREFRINGENCE-LIKE 13 (.1) Lus10002430 [exp] 177 / 1e-50 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10011932 [exp] 168 / 2e-47 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10021066 [exp] 169 / 8e-47 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10027637 [exp] 164 / 1e-45 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10003734 [exp] 160 / 2e-44 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10037726 [exp] 158 / 1e-43 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10031695 [exp] 160 / 1e-42 AT5G51640 613 / 0.0 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G286100 [exp] 575 / 0 AT5G64470 550 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Potri.009G082500 [exp] 303 / 4e-100 AT2G14530 563 / 0.0 TRICHOME BIREFRINGENCE-LIKE 13 (.1) Potri.002G195800 [exp] 188 / 4e-54 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 172 / 1e-48 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 169 / 1e-47 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 163 / 1e-44 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G074800 [exp] 158 / 3e-44 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.010G043300 [exp] 159 / 2e-43 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 159 / 3e-43 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G203900 [exp] 156 / 4e-43 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10007108 pacid=23153230 polypeptide=Lus10007108 locus=Lus10007108.g ID=Lus10007108.BGIv1.0 annot-version=v1.0 ATGCAACCGAAGCTTCTCCAGAAGCAGCTCCCGTATCTGCTCTTCGTCTCCCTCATCCTCCTGTATCTTTATTCTTTCGCTCTCCGCCCTTACTCCTCCA AATCCAATTCCCTAATTTCATCATCTGTGCCGTCCTGCAATCTCTTCAATGGAAGCTGGGTTCTACGCCCCACCAGTCCCAGACCTCTCTACGACGACTC CTGCCCATTTCACAGAAACGCTTGGAACTGCATTAGGAACCAGAGAGACAACATGGATCTCATAAATTCTTGGAAATGGGTGCCGCAAGATTGTGAATTG CCTCGAATCGACCCGGAGAGATTTCTAGGTTTCATGAGGAATAAGAAGATTGGGTTTATCGGGGATTCTTTGAATGAGAACTTTCTGGTGTCATTTTTAT GCACTCTACGAGAAGCTGACAACGGTGCCAGGAAGTGGAAGAAGAAGGGAGCTTGGAGAGGGGCTTATTTCCCCAAGTTCAATGTTGTTGTTGCTTATCA CCGTTCAGTGCTGCTTGCTAAATATAACCAGAGAGATATGAAATTGACCAATGAAGGAGTGAAGGGGACACATCGAATAGATGTTGATGTACCTGGAGAT GAGTGGGTCAACACTACTGCCTTTTATGATGTCCTGATTTTCAACACAGGCCATTGGTGGAGTTATGCTAAATTTCCACAAGAGGCACCTTTGGTGTTTT ACCGTAAAGGGAAGCCGATATATCCCCCTCTTGGGTTGTTTGATGGATTGAAAATAGTTCTTGAGAACATGGTGGCATATATTGAAAAACAAGTTCCAAA GAAGACAGTCAAGTTTTGGCGACTACAATCACCACGACATTTTTATGGCGGTGAATGGAATCAGAATGGAAGCTGCTTGTTCAAGGAGCCCCTCAAGGAA AATGAGCTTGACCTCTGGTTTGATCCCAGAAACAATGGAGTGAACAAGGAAGCAAGACAAATCAACCGGTTTATCGAGGACACATTACAAGGATCAGATA TCAAGTTGCTGGATTTGACACATCTCAGCGAGTTCAGAGCTGATGCCCACCCTGCAATTTGGTTAGGGAAGAAAGGTGCTGTGGAGATCTGGGGTCAAGA CTGCATGCATTGGTGCCTGCCTGGTGTCCCAGACACTTGGGTTGATATATTATCGAAGCTGATATATGATAAGCTGGAAGCAGCAGAAGTACGATGA
AA sequence Show only first row Show all	>Lus10007108 pacid=23153230 polypeptide=Lus10007108 locus=Lus10007108.g ID=Lus10007108.BGIv1.0 annot-version=v1.0 MQPKLLQKQLPYLLFVSLILLYLYSFALRPYSSKSNSLISSSVPSCNLFNGSWVLRPTSPRPLYDDSCPFHRNAWNCIRNQRDNMDLINSWKWVPQDCEL PRIDPERFLGFMRNKKIGFIGDSLNENFLVSFLCTLREADNGARKWKKKGAWRGAYFPKFNVVVAYHRSVLLAKYNQRDMKLTNEGVKGTHRIDVDVPGD EWVNTTAFYDVLIFNTGHWWSYAKFPQEAPLVFYRKGKPIYPPLGLFDGLKIVLENMVAYIEKQVPKKTVKFWRLQSPRHFYGGEWNQNGSCLFKEPLKE NELDLWFDPRNNGVNKEARQINRFIEDTLQGSDIKLLDLTHLSEFRADAHPAIWLGKKGAVEIWGQDCMHWCLPGVPDTWVDILSKLIYDKLEAAEVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10007108 [exp]	0	1
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	8.7	0.8004
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	15.6	0.7720
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	15.7	0.7189
AT5G55610			unknown protein		Lus10016608 [exp]	23.2	0.7317
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	25.5	0.7215
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	26.3	0.7619
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	31.6	0.7371
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10034973 [exp]	50.3	0.7038
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10007269 [exp]	60.1	0.6969
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	68.1	0.7015

Compare expression of checked genes

Lus10007108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.