Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17070 144 / 6e-42 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 135 / 2e-38 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 128 / 7e-36 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 77 / 2e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 77 / 3e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 59 / 9e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76210 54 / 2e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 52 / 8e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 50 / 5e-07 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020490 [exp] 338 / 7e-118 AT2G17070 170 / 5e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 249 / 1e-82 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 244 / 1e-80 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 239 / 5e-79 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 238 / 2e-78 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 238 / 3e-78 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 234 / 1e-76 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 231 / 1e-75 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 229 / 5e-75 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 172 / 5e-52 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 159 / 3e-47 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 159 / 4e-47 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 147 / 2e-42 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 142 / 9e-41 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 136 / 2e-38 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 123 / 2e-33 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 123 / 2e-33 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 118 / 1e-31 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 117 / 2e-31 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10007109 pacid=23153273 polypeptide=Lus10007109 locus=Lus10007109.g ID=Lus10007109.BGIv1.0 annot-version=v1.0 ATGACGGCAGTACCTTCCCATGCTCGATCCAACAGTGTACCTGTCATTTCACACCCTCTAGTTTCAGAAATTGATGACCAAGTTTGCAACTTGAGACAAT CTCAAGCTTCTGCATCCACATCATCTTCCATAGGCCAGAACCTGAATCAACTCGAGGTTCTGTATGATTGTGTTGACAGCTTACTAAAACTTCCACTTAC ACAACAAGCATTGCAGAAGTGCTTCAATGAGCTGTTAGATGGATCTCTTAGTCTCTTGGATTTGTGTAACACTGCCAAGGATGCTTTGTCACAGATGAAG GACTCTGTCGCAGAACTTCAATCCGTTATCCGAAGAAGGCAACAAGGGGGGTTGGAAGGAGAAGCGACCATGAGGTACCTCAACTCTAGAAAGACTATCA AGAAAACAATTCAGAATGTGTTGAAGGGTATGGAGAGCAAGAAATCGGTTTCTTCAGCCGACAACAACATTGAGGCGATTACCATGTTAAGAGAGGCTGA ATCCGTTGTTGTTGCGGTGTTGGAGTGCTTGTTGTCGTTCATCTCACAATCGAACTCCAAATCAAGCAAGACCCGATCATTAGTTTCTAAGCTTGTGGCT GTCCAGAGAAGGGTAACAAGTCAAGATGAAGCAAATCCAAATGAATTTGCAGAGGTGGATGCCTCTTTGAAGTCGAACAAATCAAACGAGGAGGTTCCGG TTCATCTCAAGAACCTGCAGCTGTGTATTCAAGATCTTGAAGTTGGTGTTGAATCCCTGTTTAGGCGTTTGATTAGAACAAGAGCATCCATTCTCAATAA CTACAACCTGTGA
AA sequence Show only first row Show all	>Lus10007109 pacid=23153273 polypeptide=Lus10007109 locus=Lus10007109.g ID=Lus10007109.BGIv1.0 annot-version=v1.0 MTAVPSHARSNSVPVISHPLVSEIDDQVCNLRQSQASASTSSSIGQNLNQLEVLYDCVDSLLKLPLTQQALQKCFNELLDGSLSLLDLCNTAKDALSQMK DSVAELQSVIRRRQQGGLEGEATMRYLNSRKTIKKTIQNVLKGMESKKSVSSADNNIEAITMLREAESVVVAVLECLLSFISQSNSKSSKTRSLVSKLVA VQRRVTSQDEANPNEFAEVDASLKSNKSNEEVPVHLKNLQLCIQDLEVGVESLFRRLIRTRASILNNYNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17070			Arabidopsis protein of unknown...		Lus10007109 [exp]	0	1
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	1.4	0.8960
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	7.6	0.9036
AT4G14420			HR-like lesion-inducing protei...		Lus10041149 [exp]	11.0	0.8655
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10013639 [exp]	13.4	0.8455
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	16.1	0.8734
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10042026 [exp]	24.7	0.8651
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	25.5	0.8618
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	42.2	0.8380
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10004006 [exp]	43.7	0.8577
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	46.0	0.8623

Compare expression of checked genes

Lus10007109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.