Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13120 216 / 4e-71 Ribosomal protein S10p/S20e family protein (.1.2) AT3G47370 50 / 4e-08 Ribosomal protein S10p/S20e family protein (.1.2.3) AT5G62300 50 / 6e-08 Ribosomal protein S10p/S20e family protein (.1.2) AT3G45030 50 / 6e-08 Ribosomal protein S10p/S20e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016604 [exp] 273 / 2e-93 AT3G13120 240 / 3e-81 Ribosomal protein S10p/S20e family protein (.1.2) Lus10031706 [exp] 59 / 4e-11 AT3G45030 202 / 7e-69 Ribosomal protein S10p/S20e family protein (.1) Lus10031126 [exp] 57 / 4e-10 AT3G45030 207 / 2e-70 Ribosomal protein S10p/S20e family protein (.1) Lus10031705 [exp] 56 / 6e-10 AT5G62300 211 / 5e-72 Ribosomal protein S10p/S20e family protein (.1.2) Lus10038910 [exp] 55 / 2e-09 AT5G62300 210 / 8e-72 Ribosomal protein S10p/S20e family protein (.1.2) Lus10027194 [exp] 47 / 1e-06 AT5G62300 207 / 2e-70 Ribosomal protein S10p/S20e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092800 [exp] 236 / 8e-79 AT3G13120 231 / 1e-77 Ribosomal protein S10p/S20e family protein (.1.2) Potri.001G365600 [exp] 235 / 1e-78 AT3G13120 237 / 4e-80 Ribosomal protein S10p/S20e family protein (.1.2) Potri.002G146600 [exp] 54 / 3e-09 AT3G47370 204 / 1e-69 Ribosomal protein S10p/S20e family protein (.1.2.3) Potri.012G128300 [exp] 54 / 4e-09 AT5G62300 222 / 2e-76 Ribosomal protein S10p/S20e family protein (.1.2) Potri.015G129800 [exp] 54 / 6e-09 AT5G62300 223 / 9e-77 Ribosomal protein S10p/S20e family protein (.1.2) Potri.002G116900 [exp] 37 / 0.001 AT3G47370 125 / 4e-39 Ribosomal protein S10p/S20e family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00338 [flax] [poplar] Ribosomal_S10 Ribosomal protein S10p/S20e
Representative CDS sequence Show only first row Show all	>Lus10007111 pacid=23139744 polypeptide=Lus10007111 locus=Lus10007111.g ID=Lus10007111.BGIv1.0 annot-version=v1.0 ATGGTGGTCACTTCCGTCTCTGCGTCGCTCGTTTCTTCGTTATCTATCTCAAGCTCCTCTTCGTTCTCCTCCTCCAAAACGACTCTTTCTTCTTTACCAA AGCTCTCATTTGTGCCATTTCCTTCATCGAAGCTAAAACCCTCACTGCTGAGTTCGTCTTCAACCAGGGTCTTCGCAGCCCCTGAGGTTTTGAATTCTCA GGAAATCCTAGACTCTGATTCCGAAAAATATGAGGTTGCAAATTCCGAGACTCCCAGTTCTTCATCACTTAGCATTGGTGCTGATGCAGACACGCAATGT GTTACGGGCACAAAGCAATCTAGTTCTCGAGATGTCTCATCTTTCTTATCGATTTCTGGTTTGGCCTTTACATTGATCTTACCTGTAGGAGCTTTCTCTT CTATTCAGATGGCTCCGAAGCAGAAGATCAGAATAAAACTCAGGTCTTACTTTGTGCCTTTGATTGAAGATTCCTGCAAGCAGATAATGGATGCTGCTAA TAATACAAATGCAAAAACCATGGGGCCTGTGCCTTTACCAACAAAGAAGCGTATCTACTGTGTTCTGAAATCCCCCCATGTACACAAGGATGCACGGTTT CATTTCGAAATTCGGACTCACCAGAGGCTAATAGATATTCTCTACCCGACTGCCCAAACCATTGACTCCCTAATGCAACTTGACCTCCCAGCTGGCGTGG ACGTGGAGGTCAAGCTATGA
AA sequence Show only first row Show all	>Lus10007111 pacid=23139744 polypeptide=Lus10007111 locus=Lus10007111.g ID=Lus10007111.BGIv1.0 annot-version=v1.0 MVVTSVSASLVSSLSISSSSSFSSSKTTLSSLPKLSFVPFPSSKLKPSLLSSSSTRVFAAPEVLNSQEILDSDSEKYEVANSETPSSSSLSIGADADTQC VTGTKQSSSRDVSSFLSISGLAFTLILPVGAFSSIQMAPKQKIRIKLRSYFVPLIEDSCKQIMDAANNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10007111 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	3.0	0.9698
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	5.7	0.9643
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031792 [exp]	6.9	0.9535
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	6.9	0.9646
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	7.7	0.9616
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	9.5	0.9589
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	12.6	0.9517
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	13.5	0.9449
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	14.1	0.9420
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	15.9	0.9527

Compare expression of checked genes

Lus10007111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.