Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55590 209 / 4e-67 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G47500 163 / 3e-49 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G19730 135 / 2e-38 Pectin lyase-like superfamily protein (.1) AT1G05310 117 / 3e-31 Pectin lyase-like superfamily protein (.1) AT2G21610 110 / 5e-29 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT2G36710 110 / 1e-28 Pectin lyase-like superfamily protein (.1) AT2G36700 107 / 4e-28 Pectin lyase-like superfamily protein (.1) AT5G61680 102 / 2e-26 Pectin lyase-like superfamily protein (.1) AT5G07410 102 / 3e-26 Pectin lyase-like superfamily protein (.1) AT5G07430 101 / 8e-26 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016605 [exp] 302 / 3e-103 AT5G55590 409 / 3e-142 QUARTET 1, Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 155 / 3e-46 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 136 / 4e-39 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 137 / 7e-39 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10042315 [exp] 134 / 5e-38 AT2G21610 383 / 5e-133 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10026347 [exp] 125 / 6e-35 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10012942 [exp] 125 / 3e-34 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023560 [exp] 122 / 2e-33 AT2G21610 368 / 4e-127 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10009997 [exp] 120 / 7e-33 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365700 [exp] 236 / 6e-77 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 154 / 9e-46 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 135 / 1e-38 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 128 / 1e-35 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 121 / 3e-33 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.006G120100 [exp] 120 / 2e-32 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 114 / 3e-30 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 110 / 8e-29 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 106 / 2e-27 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 100 / 2e-25 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10007113 pacid=23139747 polypeptide=Lus10007113 locus=Lus10007113.g ID=Lus10007113.BGIv1.0 annot-version=v1.0 ATGTGCAGGGAGAAGGTAGTTGTGCCGGTTACAAAGGCGTACATATCGTTGATTGGGAATGAAAGCGACGTATCAACGACAGTGATAACCTGGCACAACA AAACTTTTAATTTGGATTCTAATGGGAATGAGCTTGGTACTTTTAAGTCAGCATCAGTCACCGTTTCCTCTGATTATTTCTGCGCTACAGGGATCACTTT CCAGGGTATTTATTATTGGGCAGAATTCGGTGGTGGCCGTAGCAGGAGGGCATGGGATGCAAGCAGTGCGCTGAGAGTGTCAGGGGACAAAGCATTCTTC TACAGAGTTAAGATTGCTGGCTCACAGGACACCCTTTTGGACGACACTGGTTCACATTACTATTACCAATCTCACATTCTTGGAAGCAGTGATTTTTTAT TTGGTCGTGGAAGGTCTCTCTTTCAGGATTGCATAGTGGAATCGAAAGCTGAGAGGTGCGGAGCGATTGCAGATCACCACAGAGATTCAGGAAACGATGA GACTGGCTTCTCCTTCGTAGGGTGCTTAATCAGAGGAACTGGCAAGATTCTATTGGGAAGAGCTTGA
AA sequence Show only first row Show all	>Lus10007113 pacid=23139747 polypeptide=Lus10007113 locus=Lus10007113.g ID=Lus10007113.BGIv1.0 annot-version=v1.0 MCREKVVVPVTKAYISLIGNESDVSTTVITWHNKTFNLDSNGNELGTFKSASVTVSSDYFCATGITFQGIYYWAEFGGGRSRRAWDASSALRVSGDKAFF YRVKIAGSQDTLLDDTGSHYYYQSHILGSSDFLFGRGRSLFQDCIVESKAERCGAIADHHRDSGNDETGFSFVGCLIRGTGKILLGRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10007113 [exp]	0	1
AT5G52975			Protein of unknown function (D...		Lus10027141 [exp]	1.0	0.8752
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10018256 [exp]	2.0	0.8003
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	12.2	0.7715
AT5G53480			ARM repeat superfamily protein...		Lus10014540 [exp]	12.6	0.6700
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	17.1	0.7568
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10021039 [exp]	18.0	0.7335
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	18.8	0.7335
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	20.0	0.7291
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	21.4	0.7287
					Lus10008773 [exp]	22.3	0.5802

Compare expression of checked genes

Lus10007113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.