Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55600 583 / 0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein AT1G68580 238 / 6e-69 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G17330 61 / 5e-09 ATG2484-1 G2484-1 protein (.1) AT1G26540 57 / 2e-08 Agenet domain-containing protein (.1) AT1G09320 55 / 2e-07 agenet domain-containing protein (.1) AT1G11420 47 / 6e-05 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT5G58610 45 / 0.0003 PHD finger transcription factor, putative (.1) AT2G47230 43 / 0.0008 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016606 [exp] 1284 / 0 AT5G55600 604 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10003906 [exp] 413 / 2e-135 AT5G55600 455 / 3e-152 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10000353 [exp] 62 / 1e-09 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 61 / 3e-09 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10031429 [exp] 58 / 1e-08 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10007793 [exp] 57 / 4e-08 AT4G17330 508 / 1e-147 G2484-1 protein (.1) Lus10004730 [exp] 56 / 1e-07 AT4G17330 772 / 0.0 G2484-1 protein (.1) Lus10017088 [exp] 55 / 2e-07 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10010903 [exp] 54 / 2e-07 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365800 [exp] 709 / 0 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.006G017400 [exp] 511 / 7e-173 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.016G007500 [exp] 486 / 3e-163 AT5G55600 491 / 7e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.008G119400 [exp] 281 / 1e-84 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.010G126700 [exp] 278 / 3e-83 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G072600 [exp] 62 / 1e-09 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.003G077600 [exp] 62 / 2e-09 AT4G17330 773 / 0.0 G2484-1 protein (.1) Potri.013G006900 [exp] 59 / 4e-09 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.005G011100 [exp] 57 / 1e-08 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.002G192300 [exp] 52 / 2e-06 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10007115 pacid=23139760 polypeptide=Lus10007115 locus=Lus10007115.g ID=Lus10007115.BGIv1.0 annot-version=v1.0 ATGAGTGGAAATGGCAGTTTTTTTGTGGAATGGAAAGAACAATTTGTTTCACAAGAGCGTGGGAACCGTGTGGTTCACTATTTCCTGAAAGATTCTGCCG GAGAATTCATCCTTGCCGTTGTGGGTACTGAGAGGAGTGTTAGACACATGTTCTATGTCGTTGCTGAGGAGTTTGTACAAGCTTACGGCGCTGAAAACTC GATTCATGCTGGCTTTAAATGGAGGTCGAGAAGAGAGGTTGTTGATTGGCTTACTTCTATGCTGTCAAAGAAGCATGTACAAGGCGATCATCCCAGGTTG CAAAAATGTGATCTAGGACAAGCTTTAGAGCCGCAAGAGGTTCCTGCAACTAGTTTCGGCTTTCAACAGATGCAGGGCCGGCATTTACTTATTGTGAATG GGCATCATTCAAATATTGTATGGTCTGGTGTTTCTTGGACTTGTGGGAAGCAGCTCAAGCATTTCCCAGCATTTTGTAGAAATGGAACTACAATAGCAAT GTTGGCTTTCATTGTCATCGACTTTGCTGAATCAACTTTCTTCCTTGACCAGACTCAATCGTTTGTCTTTGTGATGGCTAAAGCCGAGAATCATTATGTT GCCTATTTGGAAGACATGTATGAAGACAGGAGGGGCCAGAAAAAGGTCAAAGTTAGATGGTTTCACCATAACCAGGAAGTCAAGGGTGTGATTCCTCTTC GAACCGTGCATCCAAAAGAAATTTTCATCACGCCGTATTCACAAGTCATAAGTGCCGAGTGTATTGATGGTCCAGCCACTGTTTTAACTCGTGAACATTA TGAGGAATGTGTGGCTTCTATTCCCAGTTCCTTCTCAACCAGAATTCATTTATGCTTTAGGCAGTTTAGGGGCAATAAAGTTAAATCTTTTGATTTGAGT AAACTGTGTGGCTATTTTGATCAAGCTATTTTCTCTTGCTTGAGTTCAAAGCATTTTGTTGAGGTTGATGATCATGGAGATGGTACAAATGGTGAAGAAG ATGAAGGATTGAGTGCAGGAGAAATGGAAAAGTTCGGAATAAAGAGGGCCCGAACCGGTGACGGGCGTCCATATTTTGAGAATGATGCCAGCCTGATGGC TACACTTAGTCCATTATATTCGGGTTTGAGACCTGGTTTTGCCCGAAATCGTTTGATTCGTCGTAAAAACGTTGGACTATATGAGGTCAACGAAAAGATT GAACATTTATGCCAAGATAGTGGAATTCGGGGCTGCTGGTTCAGGTGTACGGTCCTGCGGGTTTCTCGGAGACAAATTAAGGTGCGATATGATGACTTAC TGGATGAAGAAGAGGGTGGAAACCTTGAGGAATGGATCCCAGCTTCCAAATTAGCGATGGCTGATAAACTTGGCATGAGACATTTGGGCCGCCCAACTGT TCGACCCGCCCCTCTGAACAAAGAAACAGAAGTGGGTTTTGGAGTTGGCTCTGCTGTCGATGCATGGTGGAGCGATGGTTGGTGGGAGGGAGTTGTGACC AGCAAAACTGAGGGCTGCAATGACGTGATGCAAGTTTACTTTCCTGGTGAAAAGTTCATTTTGAACATGAAGAGAAAGGATTTGAGAACCTCACGTGATT GGGTGGATGAGCAGTGGTTTGATATCCAGGGAAAACCAGACATACTCGCAGGAGTATATGCAACCATTGTCCCCGACATAAAGATGGCCATATCTTCTTC ACCTACTGCAATGGCCAAAAGATGTGATGACTTACCTGCAACAATCGATCAGCCCCATGTTACCGATGATGAACAAACTACTGAAACTATGTTAATAATC TCCGACAGTCTCGGGATAGATGTGGACTCTGAAAATCCGAAACAGCCAATTTCAACTGACGAACCTATGGAATGTGATGCTGGTCAGCAGCCTACATTGA ATGACAAGGCTGGTGCAGATAGTGGTAGTGATGATATGAATGTCAATCTTGATAGAATGGATAATCTTGTGTCTGATGCTGTAGTTCCTCTAGTTGATGA AGTTGCTGAAATGGAAGTTAGTAATGACGGTGCAGATGATGCTACTGATGACAATAACAATGTCAAGAAGCTGGAGAAGGAGGGGTTTGCATCTTCTGGT AACAGTTGTAAATTAATACAAGTCATGGAAGTGTCAACTTAA
AA sequence Show only first row Show all	>Lus10007115 pacid=23139760 polypeptide=Lus10007115 locus=Lus10007115.g ID=Lus10007115.BGIv1.0 annot-version=v1.0 MSGNGSFFVEWKEQFVSQERGNRVVHYFLKDSAGEFILAVVGTERSVRHMFYVVAEEFVQAYGAENSIHAGFKWRSRREVVDWLTSMLSKKHVQGDHPRL QKCDLGQALEPQEVPATSFGFQQMQGRHLLIVNGHHSNIVWSGVSWTCGKQLKHFPAFCRNGTTIAMLAFIVIDFAESTFFLDQTQSFVFVMAKAENHYV AYLEDMYEDRRGQKKVKVRWFHHNQEVKGVIPLRTVHPKEIFITPYSQVISAECIDGPATVLTREHYEECVASIPSSFSTRIHLCFRQFRGNKVKSFDLS KLCGYFDQAIFSCLSSKHFVEVDDHGDGTNGEEDEGLSAGEMEKFGIKRARTGDGRPYFENDASLMATLSPLYSGLRPGFARNRLIRRKNVGLYEVNEKI EHLCQDSGIRGCWFRCTVLRVSRRQIKVRYDDLLDEEEGGNLEEWIPASKLAMADKLGMRHLGRPTVRPAPLNKETEVGFGVGSAVDAWWSDGWWEGVVT SKTEGCNDVMQVYFPGEKFILNMKRKDLRTSRDWVDEQWFDIQGKPDILAGVYATIVPDIKMAISSSPTAMAKRCDDLPATIDQPHVTDDEQTTETMLII SDSLGIDVDSENPKQPISTDEPMECDAGQQPTLNDKAGADSGSDDMNVNLDRMDNLVSDAVVPLVDEVAEMEVSNDGADDATDDNNNVKKLEKEGFASSG NSCKLIQVMEVST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	0	1
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	2.0	0.9087
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	4.9	0.9042
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	4.9	0.8911
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	5.5	0.9034
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	6.3	0.8942
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	7.0	0.8892
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	7.1	0.8827
AT1G05410			Protein of unknown function (D...		Lus10021915 [exp]	7.9	0.8842
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031221 [exp]	8.1	0.8643
AT3G49490			unknown protein		Lus10015581 [exp]	10.4	0.8726

Compare expression of checked genes

Lus10007115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.