Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07130 221 / 3e-68 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 205 / 2e-62 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT4G13700 174 / 4e-51 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52780 85 / 1e-18 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52820 81 / 6e-17 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT1G52940 79 / 1e-16 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT3G52810 78 / 5e-16 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G20500 75 / 5e-15 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT2G16430 72 / 5e-14 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 71 / 9e-14 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011847 [exp] 236 / 8e-74 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 232 / 2e-72 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10016665 [exp] 200 / 3e-60 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10007119 [exp] 186 / 6e-57 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10028533 [exp] 184 / 4e-54 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10009113 [exp] 119 / 3e-32 AT4G13700 259 / 3e-85 purple acid phosphatase 23 (.1) Lus10021378 [exp] 109 / 2e-26 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10011753 [exp] 80 / 2e-17 AT3G16970 90 / 1e-22 Plant self-incompatibility protein S1 family (.1) Lus10017059 [exp] 76 / 2e-15 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055900 [exp] 237 / 2e-74 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 224 / 1e-69 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 210 / 3e-64 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 186 / 1e-54 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.011G138200 [exp] 108 / 6e-27 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 105 / 2e-25 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.004G160100 [exp] 74 / 2e-14 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.009G121200 [exp] 73 / 3e-14 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.001G423700 [exp] 72 / 6e-14 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.005G233400 [exp] 71 / 1e-13 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10007117 pacid=23139736 polypeptide=Lus10007117 locus=Lus10007117.g ID=Lus10007117.BGIv1.0 annot-version=v1.0 ATGGACCATTCAAGCCCTTCGCTATCGCTCTATACAAAAGCTTTCGTGGGTACGCCGTCGACTTGCCGGACTCCGATCCTCGGGTTCAGAGGAAGGTCGT GGGTTTTGCTCCTGAGCAGATGTCATTATCTCTCTCTGCAACCTATGACTCCGTTTGGGTTTCTTGGAACAGGAGATTATCAAATTGGGGACGATATTGA ACCATTGGACCCCAAAAGTGTAGCAAGCTTGGTCAAATATGGAAGCACCAACTCCTCATTGACCAATGCAGCAACTGGGGAATCCCTTGTTTACAGTCGT CAGCTTTACCCTTTTGAAGGTATCCAGAACTACACCTCTGGAATCATTCACCACGTTCTTCTCCAAGCAATGAGTGATGTATACTCCTTCCAGACTATGC CGGATTCAGGTCCCCAGAGTTACCCTACAAAGATAGCAATTGTGGGAGACCTGGGTCTGACTTACAACACAACTTCAACAGTTGATCATATGGTCAGCAA CAATCCGGATCTTATTCTACTGGTTGGAGATGTTAGTTATGCCAACTTGTATCTTACTAACGGAACTGGGGCAGACTGCTACTCCTGTGCCTTTCCAGAT AGTCCTATTCATGAAACTTATCAGCCTCATTGGGATTACTGGGAAGGACATCAATACAAGTGGTTGAAGAAAGATCTAGCAAGAGTGGACAGAAGAGTGA CTCCGTGGATGGTAGCTACGTGGCATGCAACTTGGTACAGCAGCTATGCAGCACACTATAGAGAAGCAGAGTGCATGAAGGTAGCAATGGAAGACTTGCT GTGCAAGCATGGGGTGGATATGGTCTTTAACGGGCACGTAAGTCTTAGCTTCTCATCTTGA
AA sequence Show only first row Show all	>Lus10007117 pacid=23139736 polypeptide=Lus10007117 locus=Lus10007117.g ID=Lus10007117.BGIv1.0 annot-version=v1.0 MDHSSPSLSLYTKAFVGTPSTCRTPILGFRGRSWVLLLSRCHYLSLQPMTPFGFLGTGDYQIGDDIEPLDPKSVASLVKYGSTNSSLTNAATGESLVYSR QLYPFEGIQNYTSGIIHHVLLQAMSDVYSFQTMPDSGPQSYPTKIAIVGDLGLTYNTTSTVDHMVSNNPDLILLVGDVSYANLYLTNGTGADCYSCAFPD SPIHETYQPHWDYWEGHQYKWLKKDLARVDRRVTPWMVATWHATWYSSYAAHYREAECMKVAMEDLLCKHGVDMVFNGHVSLSFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007117 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10038667 [exp]	1.7	0.8041
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	6.0	0.8133
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	7.2	0.7348
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	8.4	0.8101
					Lus10015310 [exp]	9.4	0.7990
					Lus10021453 [exp]	11.4	0.7797
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	13.2	0.7625
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	15.5	0.7749
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	18.7	0.6745
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	19.2	0.7618

Compare expression of checked genes

Lus10007117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.