Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15810 147 / 9e-45 Protein of unknown function (DUF567) (.1) AT1G80120 129 / 6e-38 Protein of unknown function (DUF567) (.1) AT3G11740 49 / 3e-07 Protein of unknown function (DUF567) (.1) AT5G01750 49 / 4e-07 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT2G38640 42 / 4e-05 Protein of unknown function (DUF567) (.1) AT2G14560 40 / 0.0002 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016666 [exp] 228 / 2e-76 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 149 / 2e-45 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 106 / 9e-29 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10006656 [exp] 81 / 2e-19 AT3G15810 127 / 7e-37 Protein of unknown function (DUF567) (.1) Lus10014154 [exp] 57 / 3e-10 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 51 / 5e-08 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 45 / 9e-06 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 41 / 0.0002 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10028756 [exp] 40 / 0.0005 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192000 [exp] 150 / 4e-46 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 148 / 1e-45 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 126 / 9e-37 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.016G130700 [exp] 52 / 1e-08 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 52 / 2e-08 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 52 / 3e-08 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 50 / 9e-08 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.006G113800 [exp] 49 / 2e-07 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 48 / 7e-07 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.016G131850 [exp] 47 / 1e-06 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10007118 pacid=23139764 polypeptide=Lus10007118 locus=Lus10007118.g ID=Lus10007118.BGIv1.0 annot-version=v1.0 ATGGACGCCCACGGCCGCTGCTTGCTCACCGTCCGCAAGAAGAGGCCGAGTCTGCATCAGCGGTGGGAAGGATTTCTAGGGGAGAGGAAGGAAGGGCAGA AGGCGATATTCAGCGTGAGGAGGTCGTCGATGATTGGGCGGTCAGGGGTGAGCGTGCAGATGTACGATAATCCAGGGGAGGAGTACGAGATCGAAGGGAG CTACGGGAGCCGGAGCTGCACGGTGATGGACGTTGCGAGGAGAGCGGTGGTAGCGGAGATCAGACGTAAAGTGGACGCGTCAACGAACGTGGTGCTTGGG AAGGACGTTCTGCTGTTGGCGGTGAAACCGAGGTTCGACGGGGCGTTCGCAATGGGAATGGTGCTGGTTCTGGATCAGATCTGCGGTGGCGATGTGGTTG ATTGCGGTGAAGAAGGTGATGGTGATGGCACCGTCGATGTGGAACACGTGGGGAAGGAGGAGGTGATGGGTCGTCGGCCACTAGTTGCGGACACTGTCCC ACTGGAGCGATAA
AA sequence Show only first row Show all	>Lus10007118 pacid=23139764 polypeptide=Lus10007118 locus=Lus10007118.g ID=Lus10007118.BGIv1.0 annot-version=v1.0 MDAHGRCLLTVRKKRPSLHQRWEGFLGERKEGQKAIFSVRRSSMIGRSGVSVQMYDNPGEEYEIEGSYGSRSCTVMDVARRAVVAEIRRKVDASTNVVLG KDVLLLAVKPRFDGAFAMGMVLVLDQICGGDVVDCGEEGDGDGTVDVEHVGKEEVMGRRPLVADTVPLER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15810			Protein of unknown function (D...		Lus10007118 [exp]	0	1
AT1G09310			Protein of unknown function, D...		Lus10018630 [exp]	2.0	0.8090
AT1G65295			unknown protein		Lus10026997 [exp]	5.0	0.7804
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	6.0	0.7901
AT1G14310			Haloacid dehalogenase-like hyd...		Lus10036740 [exp]	11.5	0.7450
AT5G40140			RING/U-box superfamily protein...		Lus10039447 [exp]	16.0	0.7559
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	17.9	0.7813
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	18.5	0.7474
AT1G48440			B-cell receptor-associated 31-...		Lus10001080 [exp]	19.8	0.7767
AT1G11440			unknown protein		Lus10018397 [exp]	19.8	0.7431
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10018466 [exp]	21.0	0.7926

Compare expression of checked genes

Lus10007118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.