Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07130 362 / 2e-122 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT4G13700 302 / 6e-100 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT2G32770 292 / 9e-95 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT3G52810 131 / 1e-34 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52820 130 / 2e-34 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52780 118 / 3e-30 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 109 / 9e-27 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT1G56360 99 / 5e-23 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT5G34850 99 / 1e-22 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT2G16430 97 / 3e-22 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016665 [exp] 579 / 0 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10011847 [exp] 367 / 4e-124 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 363 / 2e-122 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10016667 [exp] 348 / 1e-115 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10028533 [exp] 308 / 1e-100 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10007117 [exp] 186 / 7e-57 AT3G07130 221 / 2e-27 purple acid phosphatase 15 (.1) Lus10009113 [exp] 153 / 6e-45 AT4G13700 259 / 3e-85 purple acid phosphatase 23 (.1) Lus10021376 [exp] 127 / 1e-33 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021378 [exp] 124 / 5e-31 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055800 [exp] 405 / 4e-139 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055900 [exp] 371 / 9e-126 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 370 / 2e-125 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 301 / 8e-98 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.018G123700 [exp] 117 / 3e-29 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.006G063700 [exp] 115 / 1e-28 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 112 / 1e-27 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 112 / 1e-27 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 111 / 3e-27 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.005G233400 [exp] 108 / 5e-26 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10007119 pacid=23139745 polypeptide=Lus10007119 locus=Lus10007119.g ID=Lus10007119.BGIv1.0 annot-version=v1.0 ATGGTTTACCCCATTGTCGTCTTCCTTCTTCTTCTTCTATGGACCTCATTACAACACTTCGTCCATGCCGATTTCCCAACCACTCTTCAAGGTCCCTTCA AGCCCTTTTCTGCACCTCTTGCTGCTAAATACTTCAATGACAAGTCAATCGATTTGCCTTCCAATGACTCCCAAGTTGAGAGGACTGTTAAGGGTTTCCA GCCTGAACAAATCTTCCTCTCCCTCTCTTCCAACTACAACTCCGTTTGGGTCTCCTGGGTCACAGGGGATTCCAATGTTGTTTACGACGATCCTGACTCA ATTGCCAGTGTAGTTCAATATGGGGTTTCCAGGTCACCAATGGACCATAAAGCACTTGGCTATTCCCTCGTTTACTCTCAGCTTTATCCTTACGACGCCC TTCATAACTACACATCCGGAATCATACACCACGTTCGCCTCACAGGATTGGAACCTGAAACACTGTACCAATATCGATGTGGAGATCCTCACATTCGAGC AATGAGTGATGTGTTTTACTTCAGGACAATGCCACTTCCTAACCCCACAAATTATCCAGCCAGAATAGCAGTGGTGGGAGATTTAGGACTCACTATCAAT ACCAGCACAACAGTTGACCATATTCTCAGCAATGATCCTGATTTGGTTGTCTTAGTTGGGGTTTTAAGTTATGCTGATATGTATCTAAATGGAACTGGCT CTGATTGTTATGCTTGCTCCTTCCCCGACACTCCTATCCATGAAACTTACGAGCCTCGTTGGGATGACTGGGGAAGGTTTATGCAGCCTCTCACAGCTAA TGTCCCTACAATGGTTATAGGAGGAAAACATGAGATAGAACCACAGGTTGATGATCAGATATTTGTTTCTTACAGCTACAGATTTGCATTCCCGTATGAC GGAATTGGATCATCCTCCCCGCTCCATTACTCTTTCAAGGCAGGAGGGATACATTTTGTTTTGCCCAGTCCCTACACTCCTTATGACACATCATGTACGC AAGCTTTTCCCTCAAGCTTTTGA
AA sequence Show only first row Show all	>Lus10007119 pacid=23139745 polypeptide=Lus10007119 locus=Lus10007119.g ID=Lus10007119.BGIv1.0 annot-version=v1.0 MVYPIVVFLLLLLWTSLQHFVHADFPTTLQGPFKPFSAPLAAKYFNDKSIDLPSNDSQVERTVKGFQPEQIFLSLSSNYNSVWVSWVTGDSNVVYDDPDS IASVVQYGVSRSPMDHKALGYSLVYSQLYPYDALHNYTSGIIHHVRLTGLEPETLYQYRCGDPHIRAMSDVFYFRTMPLPNPTNYPARIAVVGDLGLTIN TSTTVDHILSNDPDLVVLVGVLSYADMYLNGTGSDCYACSFPDTPIHETYEPRWDDWGRFMQPLTANVPTMVIGGKHEIEPQVDDQIFVSYSYRFAFPYD GIGSSSPLHYSFKAGGIHFVLPSPYTPYDTSCTQAFPSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007119 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	3.6	0.8301
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	7.6	0.8141
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10018256 [exp]	7.7	0.7558
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	10.2	0.8037
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	11.0	0.8074
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	11.5	0.8133
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	12.4	0.7352
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	17.4	0.7447
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	19.2	0.7711
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	19.9	0.7955

Compare expression of checked genes

Lus10007119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.