Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04860 219 / 3e-60 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G32780 215 / 1e-58 ATUBP1 ubiquitin-specific protease 1 (.1) AT1G32850 78 / 1e-14 UBP11 ubiquitin-specific protease 11 (.1) AT4G10570 75 / 2e-13 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 74 / 2e-13 UBP10 ubiquitin-specific protease 10 (.1.2) AT2G40930 74 / 3e-13 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G22030 68 / 2e-11 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G24640 65 / 1e-10 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 64 / 3e-10 UBP18 ubiquitin-specific protease 18 (.1) AT5G57990 62 / 8e-10 UBP23 ubiquitin-specific protease 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016664 [exp] 1179 / 0 AT1G04860 669 / 0.0 ubiquitin-specific protease 2 (.1) Lus10016663 [exp] 1133 / 0 AT1G04860 392 / 4e-120 ubiquitin-specific protease 2 (.1) Lus10001661 [exp] 78 / 2e-14 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10032623 [exp] 78 / 2e-14 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10017343 [exp] 77 / 4e-14 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10043127 [exp] 76 / 4e-14 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 76 / 8e-14 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10008276 [exp] 76 / 9e-14 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 75 / 1e-13 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315600 [exp] 615 / 0 AT1G04860 479 / 2e-153 ubiquitin-specific protease 2 (.1) Potri.017G055600 [exp] 602 / 0 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.011G152500 [exp] 80 / 4e-15 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 78 / 1e-14 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.016G031900 [exp] 75 / 1e-13 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G033800 [exp] 75 / 2e-13 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.018G009500 [exp] 71 / 3e-12 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.001G214800 [exp] 68 / 1e-11 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 67 / 5e-11 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G270600 [exp] 66 / 6e-11 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10007120 pacid=23139742 polypeptide=Lus10007120 locus=Lus10007120.g ID=Lus10007120.BGIv1.0 annot-version=v1.0 ATGGTGAGGGGCTTGGTTAACCTGGGGAACACTTGCTTTTTCAATTCCGTAATGCAGAATCTACTATCTCTGAATAGCTTGAGGAGTTACTTTTTCAGTG AAGATTCTTCTTATGGTCCTCTTTCTAGTTCTTTGAGGAAGCTTTATGATGAAACAAGACAAGAGACAGGTATGAGAAATGTGATTAATCCGAGATCATT TTTTGCGTCTCTCTGTTCTAAGGCTCCTCAGTTCAGGGGATATCAGCAGCATGATAGTCATGAATTATTGCGTTGCTTACTTGATGCATGGTCCACCGAA GAGTTGGCCAGAAGAAAACAGATCAGTGCATTTGAGCAAAGTGCTGTTTCTGTACCGAATCTTCCTACATTTGTGGATGCTGCGTTTGGAGGACAAATCT CTAGTACTGTATGTTGCATAGAATGTGCACATTCCTCAACTGTCTATGAGCCATTCTTGGACCTCTCTCTTCCAGTTCCGACTAAGAAGCCTCCAACTAA AAAGCTCCAGTCTTTATCTCGAGGAAAGAAGACCAAGCTACCACCAAAGCGAGCTGGAAAAGTTAGACAAAAAACCAGCAAGGATTCAGATCGAGTGCAT GCTGAGAGTGCCACAAGCTCGTCAACGAGCAATGAATTTGGGCATGAAACACTTTTAGCGACCCCTCTTACTGATAATGCAGCATCTTCCTCGGGTAGTC CTACAGTGCCTGACTTTGCTGGCCAAACTCCCGAGCCTGAAGCAAAGGAGTCAGGACCTGGAAACTTATTGGACACTCATTATTGTGTGCAAAAGGAAGA ACTTGGGGCTGCGCTGGAGCAAAAATCATCATCTTTAGATGAATTTGCATGGATGGATTATCTAGAACCTGAAACTGAAACTATTTCAAACGAGAACGAT CTGGCTCCACAAATTGATGATTTATCAATTGTTCAATATTCACGGGAGCAAGATTTGGGCTCATCCGGGAAAGAGGAGACTCCTCCTTTTGGTCCAGTTC AACAAATCCCATATCCAGAGCCAGAATCATCTTCGATAAATCCTTGGGAAGAGGAAGTCCCGTTGCAGGTCCAAAGCTCTGAAGTTCTGCTGCTTCCTTA CTATGAAGAGAGCGTCACTTGTGGAGAAATTACTGCTGGAGAAGCTGAAGCTTCATCTTCAGTTGTGGGATGTGGACAGGATGAAGCAGCCTTTGACGGC TTTGGTGATATGTTCAACGAGCCTGAGGTTTTTATAGGCCCTGTTGCAGCGCCTGCTTTAAGCAATGGTCTTACTCCTGGCAATAGCAGCGACTCTGATC CTGGTGAAGTTGATGACTCTGATTCTCCAGTATCCGTGGAAAGTTGTCTGGCTCACTTTATAAAGCCAGAGATTCTCTCCAATGATAATGCTTGGGAATG TGAGAACTGTTCCAAAATCATACACCTCCAGGAACAGAAGTCAAAGAAGAAGCTGGGGAGAACTGTATTAGGAGTTTTAAATGGAGGTGAGAGTGAAAGC CAAAATTTAGACACCTCATGCTCTTCAGAAAATGTCACAAATGGGGAAGCCATCACAGATGCGCTTTGCAATTTCAAAGATGAAAACATAGTTTCTAATG GTGGAGAAACTGATTGCACAAGTGAAATTGGCATGATATCTGAAAACGGTCCAGTGCCACAATGTTGTCCTATTCAGGAAGAATCAGAAAGTCAGGATGG CTCAAGTGGCTCATCTCTTACCCGTGGAGTTGATGATTCTATTTCTACCTGCACTGGCAATACATCTGCTGTGAATCAAGAGACTAAGTCTCAGTCATCT GCAAATGTTGAATCAGAAGAAAGTGAAGACGAAGAGAAAACAACCAAAAAAGTGATTGTGAAGAGGGACGCAACTAAAAGGGTCCTTATTGACAAAGCAC CGCCAATACTGACAATACATTTGAAGAGGTTCAGCCAGGATTTTCGTGGACGATTGAGTAAATTGAATGGCCACGTTAACTTTAGAGATCAACTTGATCT TAGAGCATACATGGATCCGAGGTGTGAAGATAAAGAGAGGAGTGTGTACCGATTGACAGGGGTGGTGGAACATCTGGGGACAATGCGAGGAGGCCATTAC GTTGCATACATAAGAGGAGGAGGAGGAGGAGGAGAGAAGAGCGGTGGTGGTTGCGTATGGTATCACGTGAGCGATTCGTATGTGAGGCAGACTTTGTTGG ACGAAGTTATGCGCTGTGAAGCATACATCTTATTCTACGAGAGGGTTTGA
AA sequence Show only first row Show all	>Lus10007120 pacid=23139742 polypeptide=Lus10007120 locus=Lus10007120.g ID=Lus10007120.BGIv1.0 annot-version=v1.0 MVRGLVNLGNTCFFNSVMQNLLSLNSLRSYFFSEDSSYGPLSSSLRKLYDETRQETGMRNVINPRSFFASLCSKAPQFRGYQQHDSHELLRCLLDAWSTE ELARRKQISAFEQSAVSVPNLPTFVDAAFGGQISSTVCCIECAHSSTVYEPFLDLSLPVPTKKPPTKKLQSLSRGKKTKLPPKRAGKVRQKTSKDSDRVH AESATSSSTSNEFGHETLLATPLTDNAASSSGSPTVPDFAGQTPEPEAKESGPGNLLDTHYCVQKEELGAALEQKSSSLDEFAWMDYLEPETETISNEND LAPQIDDLSIVQYSREQDLGSSGKEETPPFGPVQQIPYPEPESSSINPWEEEVPLQVQSSEVLLLPYYEESVTCGEITAGEAEASSSVVGCGQDEAAFDG FGDMFNEPEVFIGPVAAPALSNGLTPGNSSDSDPGEVDDSDSPVSVESCLAHFIKPEILSNDNAWECENCSKIIHLQEQKSKKKLGRTVLGVLNGGESES QNLDTSCSSENVTNGEAITDALCNFKDENIVSNGGETDCTSEIGMISENGPVPQCCPIQEESESQDGSSGSSLTRGVDDSISTCTGNTSAVNQETKSQSS ANVESEESEDEEKTTKKVIVKRDATKRVLIDKAPPILTIHLKRFSQDFRGRLSKLNGHVNFRDQLDLRAYMDPRCEDKERSVYRLTGVVEHLGTMRGGHY VAYIRGGGGGGEKSGGGCVWYHVSDSYVRQTLLDEVMRCEAYILFYERV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007120 [exp]	0	1
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	2.0	0.8994
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	6.2	0.8791
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	7.2	0.8852
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	10.0	0.8775
AT3G58050			unknown protein		Lus10016244 [exp]	10.1	0.8752
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	10.5	0.8769
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	10.6	0.8680
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	11.2	0.8580
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	11.5	0.8554
					Lus10037878 [exp]	13.4	0.8486

Compare expression of checked genes

Lus10007120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.