Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04860 101 / 3e-25 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G32780 95 / 7e-23 ATUBP1 ubiquitin-specific protease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016664 [exp] 317 / 4e-103 AT1G04860 669 / 0.0 ubiquitin-specific protease 2 (.1) Lus10016663 [exp] 308 / 4e-99 AT1G04860 392 / 4e-120 ubiquitin-specific protease 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315600 [exp] 164 / 3e-47 AT1G04860 479 / 2e-153 ubiquitin-specific protease 2 (.1) Potri.017G055600 [exp] 160 / 8e-46 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Lus10007121 pacid=23139750 polypeptide=Lus10007121 locus=Lus10007121.g ID=Lus10007121.BGIv1.0 annot-version=v1.0 ATGGGGAAAAAGTTAAAGAAAAAGGGCCGTTCGCCTCAGACTCAGAAGGAGAAGAGGTTAGTTAGCCACTCTCCTAGCAAGGTACCTCATCAACCAAATA TCCGTTTGAGTGAGGACAAAGTTAGTGCTGATGTTGTCATGGTACCTGAACCGCGAAGAATATGTGCTCATCTGGAGAAGGGGTTTGATTTAACCCAGTT TACTGAGAAAATTAATTCTTCAGATTCTGCGGAGTGTGAGGATTGTCAGGAGGCTGTTGCTGACAGAAGGGGAGGAGCCAAAGGAAAGGGTAAACATGGG AAGAAGAAAGGAGCTGATTCCAAGTCTGATTCTAAGGCCATCTGGATATGCTTGAAATGTGGCCATTATGCTTGTGGAGGGGTTGGTTTGCCAACTAACT CTCAGTGCCATGCTATGCGGCATGCTAAACAAAATGGTCACCCCTTGGCGATCCAGTTGGTGAACACGCATCTTAGGTGGTGCTTCAAGTGCAACAGCTT CATTCCAGCTGATAAATCAGAAGATAATGTGGCAGTGTCTTGA
AA sequence Show only first row Show all	>Lus10007121 pacid=23139750 polypeptide=Lus10007121 locus=Lus10007121.g ID=Lus10007121.BGIv1.0 annot-version=v1.0 MGKKLKKKGRSPQTQKEKRLVSHSPSKVPHQPNIRLSEDKVSADVVMVPEPRRICAHLEKGFDLTQFTEKINSSDSAECEDCQEAVADRRGGAKGKGKHG KKKGADSKSDSKAIWICLKCGHYACGGVGLPTNSQCHAMRHAKQNGHPLAIQLVNTHLRWCFKCNSFIPADKSEDNVAVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007121 [exp]	0	1
AT5G24350			unknown protein		Lus10007768 [exp]	1.7	0.9519
AT5G36930			Disease resistance protein (TI...		Lus10042165 [exp]	3.0	0.9278
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	8.2	0.8960
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	11.4	0.9378
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032543 [exp]	11.6	0.9023
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035941 [exp]	13.6	0.9371
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	16.4	0.9378
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10016729 [exp]	16.6	0.8751
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	17.8	0.8999
AT5G27970			ARM repeat superfamily protein...		Lus10004117 [exp]	18.5	0.9299

Compare expression of checked genes

Lus10007121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.