Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039420 [exp] 80 / 1e-20 ND / Lus10016668 [exp] 44 / 8e-07 AT3G24100 61 / 3e-14 Uncharacterised protein family SERF (.1) Lus10010589 [exp] 37 / 0.0007 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04419 [flax] [poplar] 4F5 4F5 protein related disordered region
Representative CDS sequence Show only first row Show all	>Lus10007122 pacid=23139755 polypeptide=Lus10007122 locus=Lus10007122.g ID=Lus10007122.BGIv1.0 annot-version=v1.0 ATGGAGCTAGAGCTGCAGTTTAACATTCCCGGGCCTGTGTTCGATTTTGGATTTACGGATGTTAGTGGGACACAGCAGAGTGCAGAGCAGATACTAGATA GTATCACTGCAGGATCGCCACCGAACATCGATGACATCAGAGATGATTCGGAGAGCTCGGGCGATGACCAGCCTGATGATGATCAGCATGATCCTCCATT TCACCCAGCCCTTTTAAGGGAGCGTGATCGCGACAGAGCTAATGCTCGCAACCCTAAGGGCGGCAAGGGCAAGGACGACGGCTTGACCCCTGAACAACGC CGCGAGAGGGACGCCAAGGCGCTGCAAGAGAAGGCGGCGAAGAAAGCCGCGCAGGGTTCCGGAGGAAATTCTTCCGGAGGTAAAGGAGACACCAAGAAAT AA
AA sequence Show only first row Show all	>Lus10007122 pacid=23139755 polypeptide=Lus10007122 locus=Lus10007122.g ID=Lus10007122.BGIv1.0 annot-version=v1.0 MELELQFNIPGPVFDFGFTDVSGTQQSAEQILDSITAGSPPNIDDIRDDSESSGDDQPDDDQHDPPFHPALLRERDRDRANARNPKGGKGKDDGLTPEQR RERDAKALQEKAAKKAAQGSGGNSSGGKGDTKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24100			Uncharacterised protein family...		Lus10007122 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	2.6	0.7998
AT5G50460			secE/sec61-gamma protein trans...		Lus10035206 [exp]	4.6	0.7765
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	8.0	0.7812
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	14.0	0.7188
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10026910 [exp]	14.5	0.7232
					Lus10017454 [exp]	17.1	0.7391
AT3G24100			Uncharacterised protein family...		Lus10016668 [exp]	17.3	0.7729
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	19.6	0.7163
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	20.7	0.7332
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	23.6	0.7259

Compare expression of checked genes

Lus10007122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.