Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08690 128 / 2e-38 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G56150 126 / 2e-37 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT5G41700 125 / 4e-37 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT2G16740 125 / 4e-37 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT5G53300 124 / 8e-37 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT1G64230 124 / 9e-37 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT4G27960 123 / 2e-36 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT3G08700 118 / 3e-34 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G13550 106 / 3e-29 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT1G78870 98 / 2e-26 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016670 [exp] 269 / 2e-93 AT5G56150 149 / 1e-46 ubiquitin-conjugating enzyme 30 (.1.2) Lus10028700 [exp] 130 / 6e-39 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 130 / 6e-39 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10022726 [exp] 124 / 1e-36 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 124 / 1e-36 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 124 / 2e-36 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10027570 [exp] 122 / 5e-36 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 122 / 5e-36 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 122 / 6e-36 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055300 [exp] 139 / 5e-42 AT5G56150 183 / 9e-60 ubiquitin-conjugating enzyme 30 (.1.2) Potri.011G168200 [exp] 128 / 2e-38 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G083800 [exp] 128 / 3e-38 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.001G471200 [exp] 127 / 6e-38 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 125 / 4e-37 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 124 / 7e-37 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 124 / 8e-37 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 124 / 9e-37 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.015G023300 [exp] 122 / 5e-36 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.012G033000 [exp] 122 / 5e-36 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10007126 pacid=23139739 polypeptide=Lus10007126 locus=Lus10007126.g ID=Lus10007126.BGIv1.0 annot-version=v1.0 ATGGCAGTCTTCTCTGGGCTCAAACTTTTCAGTAGCAAATCCTCCATCAGGAAATCAAAAAAGACCACACCAGAGCGCAGACTCGACAAGGAAATAAAGC GGGCAAGAGATCACAACATTCCATCCCACTGCAGCTTTGGACCTGCTGAAGATGGTGATGACATCTACAAGCTTCAAGGTGCCATCTTTGGTCCAGCTCA AACACCTTATGAAGGTGGTGTCTTCCTCTTGTCCATCCGTATTCCCAAAAGCTACCCTTTCACCCCTCCAAAGATCAACTTCATCACCAAGGTTTATCAC CCAAACGTGAGACGAGATGGGAGGATTGAAGTGGATATTCTGGGGAATAACTGGACACCTGCCTTGACAATTGAGAAGCTGTTACTGTCAATTTGCTCAA TGCTTCCAGACCCAGATCCTGATGCTGATTCTCCACTCAATAATCCTGCTGCTGCCCTCTATCTATCTGATCTCAAATCTTTCAACAGGAAAGCCAGGGA ATGGACTCTCAAATATGCAATTCTCTGA
AA sequence Show only first row Show all	>Lus10007126 pacid=23139739 polypeptide=Lus10007126 locus=Lus10007126.g ID=Lus10007126.BGIv1.0 annot-version=v1.0 MAVFSGLKLFSSKSSIRKSKKTTPERRLDKEIKRARDHNIPSHCSFGPAEDGDDIYKLQGAIFGPAQTPYEGGVFLLSIRIPKSYPFTPPKINFITKVYH PNVRRDGRIEVDILGNNWTPALTIEKLLLSICSMLPDPDPDADSPLNNPAAALYLSDLKSFNRKAREWTLKYAIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10007126 [exp]	0	1
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	1.0	0.9222
AT3G61920			unknown protein		Lus10002686 [exp]	2.0	0.8802
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	2.0	0.8879
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	5.3	0.8688
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	7.1	0.8862
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003208 [exp]	8.5	0.8611
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	9.2	0.8736
AT4G22250			RING/U-box superfamily protein...		Lus10035335 [exp]	9.8	0.8544
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	10.0	0.8770
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	10.2	0.8598

Compare expression of checked genes

Lus10007126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.