Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04880 374 / 3e-126 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G76110 248 / 9e-79 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT3G13350 213 / 2e-65 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G55650 192 / 3e-57 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT2G17410 56 / 3e-08 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G20910 55 / 8e-08 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT1G76510 51 / 9e-07 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT4G11080 44 / 0.0002 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016671 [exp] 774 / 0 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 244 / 5e-77 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10005636 [exp] 157 / 5e-44 AT1G76110 273 / 2e-90 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10001618 [exp] 53 / 4e-07 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10016045 [exp] 52 / 7e-07 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10022981 [exp] 52 / 1e-06 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10008495 [exp] 45 / 0.0001 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10023091 [exp] 42 / 0.0007 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055200 [exp] 477 / 2e-166 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G315200 [exp] 448 / 1e-155 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.005G246700 [exp] 259 / 4e-83 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G168800 [exp] 251 / 5e-80 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.011G145450 [exp] 58 / 6e-09 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 56 / 2e-08 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.004G208900 [exp] 56 / 5e-08 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 53 / 3e-07 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G093700 [exp] 44 / 0.0003 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 42 / 0.0007 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10007127 pacid=23139737 polypeptide=Lus10007127 locus=Lus10007127.g ID=Lus10007127.BGIv1.0 annot-version=v1.0 ATGGCATCAACTTCTTGTGCCAAGCAGATTCCTGTCCCCATGAGAGACGCGGTCGTCAATTATATTCGGTATCCAGCTGCTGTAGCCGAATATGAGGATG TCAAAAACAATCCTAGGATATTTATGGCCAGTTTGGAGAAGTTCCATTTGTCTATGGGAACTAAGTTCATGATCCCCATAATAGGGGGCAGAGATTTGGA CTTGCATCGCCTCTTTGTGGAGGTAACACAACGTGGTGGTATTCATAAGATACTTAGAGAGAAAAGATGGAAAGAAGTGACAGCCACTTTCAACTTCCCC TCTACCGCAACAAATGCATCTTTTGTGTTGCGCAAGTACTACGGATCCTTGCTTCTTCACTATGAACAGCTCTACTTTTTGAAAGCTCAGGGCTGGAATC CTGCCGCGGCAGCTCCTCTACATACCCCTTGGGTGGGACAGGTTCCAGTTCAAAGTACTGTGCTGCCATCACCACAAAACCAAGCACCACCGATGATAAA CGTTCCTGAACTTCTGACGGCTAGGGCAGAATCAGCAACAGGGCCTTCGGTCGTTGGTGTAATTGATGGGAAGTTTGACGGTGGTTATCTTGTAACTGTC ACAATAGGGAACGAGAGACTGCAAGGTCTGCTTTATCAGGCAGCAGAAGGTCAGCATTCCCAGATGTCTCAGCGTTATCCTAGTATGTTATCCAACAACA ATGGCATCGATTATGCTGTACCACCACCTTGTAAACGAAGAAGACGCAGGAAGAAGTGCGAGATAAAAAGGAGGGATCCTGACCATCCAAAACCTAACAG AAGTGGTTACAACTTCTTCTTTGCTGAGCAGCACGCAAGACTAAAACAACTTCATACAGGGAAAGACAGAGAAATTAGCCGGATGATTGGAGAACTATGG AACAAGCTCAAGGATGGGGAAAGATCTGTTTATCAAGAGAAAGCTATGAAAGATAAAGAAAGATACAGATCAGAGATGGAGGGTTATAGGGAGAGACTGA GAACAGGACAATCGGCTAGCGAGGCAGTTCCATTGGCGCAATGGCAGCCTGTACAAGATGTAGATATGATGGAAACTGATCTCAACACTGCTGGAACAGA AGGCATGGATAATGACAGCAGCAGTTACGTTGAGGTTGATTCTGATGATGAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAAACATGGACGAA GAGCACTTGGACCGGGGAGAATCTGCAGTCCATGGATTAGGTGTTGGTTCTTGCGATTTGGGTTTGGAGGGTTCAGCTGACCCATCTAGCAGAGAGGCAG ACTGCAAAATTGAAGATAAGAGAGGTGAGAAGAAATTGGAGAATATGTCATCTGTTGAAGCAAATAAGGAAAGTGTTACAGGAACAGGAGCATGA
AA sequence Show only first row Show all	>Lus10007127 pacid=23139737 polypeptide=Lus10007127 locus=Lus10007127.g ID=Lus10007127.BGIv1.0 annot-version=v1.0 MASTSCAKQIPVPMRDAVVNYIRYPAAVAEYEDVKNNPRIFMASLEKFHLSMGTKFMIPIIGGRDLDLHRLFVEVTQRGGIHKILREKRWKEVTATFNFP STATNASFVLRKYYGSLLLHYEQLYFLKAQGWNPAAAAPLHTPWVGQVPVQSTVLPSPQNQAPPMINVPELLTARAESATGPSVVGVIDGKFDGGYLVTV TIGNERLQGLLYQAAEGQHSQMSQRYPSMLSNNNGIDYAVPPPCKRRRRRKKCEIKRRDPDHPKPNRSGYNFFFAEQHARLKQLHTGKDREISRMIGELW NKLKDGERSVYQEKAMKDKERYRSEMEGYRERLRTGQSASEAVPLAQWQPVQDVDMMETDLNTAGTEGMDNDSSSYVEVDSDDEDEEEEEEEEEEKNMDE EHLDRGESAVHGLGVGSCDLGLEGSADPSSREADCKIEDKRGEKKLENMSSVEANKESVTGTGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	0	1
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Lus10016090 [exp]	5.2	0.7880
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	5.3	0.8214
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	7.7	0.7850
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10003839 [exp]	8.1	0.7674
AT3G25280			Major facilitator superfamily ...		Lus10038222 [exp]	8.9	0.7395
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10002720 [exp]	15.2	0.7337
AT3G02300			Regulator of chromosome conden...		Lus10030712 [exp]	16.5	0.7627
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	18.5	0.7974
					Lus10024718 [exp]	25.7	0.7429
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023765 [exp]	27.3	0.7568

Compare expression of checked genes

Lus10007127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.