Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13630 104 / 2e-23 Protein of unknown function, DUF593 (.1.2) AT4G13160 89 / 3e-19 Protein of unknown function, DUF593 (.1) AT1G04890 87 / 5e-18 Protein of unknown function, DUF593 (.1) AT1G70750 64 / 2e-10 Protein of unknown function, DUF593 (.1) AT5G16720 63 / 5e-10 Protein of unknown function, DUF593 (.1) AT3G54740 61 / 2e-09 Protein of unknown function, DUF593 (.1.2) AT2G30690 58 / 1e-08 Protein of unknown function, DUF593 (.1) AT5G06560 55 / 1e-07 Protein of unknown function, DUF593 (.1) AT1G74830 55 / 1e-07 Protein of unknown function, DUF593 (.1) AT1G18990 52 / 1e-06 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016673 [exp] 966 / 0 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10011854 [exp] 90 / 1e-18 AT4G13630 199 / 1e-56 Protein of unknown function, DUF593 (.1.2) Lus10022791 [exp] 89 / 4e-18 AT4G13630 200 / 2e-57 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 71 / 2e-12 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 69 / 1e-11 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10029342 [exp] 62 / 1e-09 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 61 / 2e-09 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 61 / 2e-09 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10033854 [exp] 59 / 8e-09 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055100 [exp] 187 / 2e-50 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.002G242900 [exp] 155 / 1e-39 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 64 / 3e-10 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 63 / 4e-10 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 63 / 5e-10 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 63 / 6e-10 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 61 / 2e-09 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 60 / 4e-09 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.016G065200 [exp] 57 / 3e-08 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.019G012200 [exp] 56 / 7e-08 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10007129 pacid=23139753 polypeptide=Lus10007129 locus=Lus10007129.g ID=Lus10007129.BGIv1.0 annot-version=v1.0 ATGGCATGTCAAGAGGTAGAATCATGGACATTTAGTGGGCTGGTATCCGCATTTCTGGACCTTGCAATTGCATACCTGTTCCTCTCTGCATCAGCACTTG CTTATTTGGCATCCAAATTTCTATCTCGTATTGGGTTGTCTCTGCCTTGCTCTTGTAATCACAAATCCGGAAACTGCTGGCCGAGGTTTCTACTCGATAA TCCCTTTCATAGCATATCAAATGTTCAATCATCTATCAGGAGGGGACTCCCTTTTGATTTGTTGCTCGACGAAGAAGAAATCCAGGAATTCGCCCTTGGT GGAGCTGCTGGCCGATTGGAGGTTGAAAGGTCTTGTAACTCATTACCGTTGAAGAATGTTGGTGCTATTGGGGTTTCGGAGACAAATAATGACAACATCT CCGCGGGGGAGATGCTGGAGAAGAAATTTGATATGGCGAAGAACAGATTGAAGGCGAAATGCAGCCATCGCATAAGGCGTGCTGTTGAAGATGGGACAAT GCCTGAAGTTCCACCTTATTATTCTTCCTCTTCTTCGCAACCAAATGCGCGTATTCCTCCCTTGCCTCCTCCAAATGGGAGTAAGGTGGTGAATACAGTT ACTGGATGCATGCTTCCTGCTACCTTTTGTGTTGCTACTCCACACGATGATGCAGCTTCTTCTACAGACCATATTGAATCAACTGTACGTGGTGATGAAG TTAAACAGACGGCGAATGATGTCTATCCGAGCGATGATTCGAAATCCAAAGACAATGCCAATGCTGATGATGAGAGAAATACTCTTAGAGTCTTGGAGCA AGCATTAGAAGAAGAACGAACTGCTCGTTTGGCTTTATGTCAGGAGCTCGAACAGGAGAGAAATGCTGCTGCATCTGCCGCCGATGAGGCCATGGCTATG ATTCTACGGCTTCAAGAGGAGAAGGCATCAGTAGAGATGGCAGCCAGGCAATACCAGAGGATGATTGATGAAAAATCGGCCTATGATCATGAAGAGATGA GCATTTTGGAGGAGATGCTTCTGAAGAGGGAGCGGGAAAAACATTTCTTGGAGAATGAACTTGAGGCGTACAAGATGATGATTTTTGGGAACGAGCAGTT GGATTCTGGTGTGTCGGACATTGAAACCATGCCTGGGAATGGGGCTTCTTTCTCTCAGTATTCAAGTGAAGATTCTTCCGTACTGTGGCAGAGAATCGTG GAGACAAAAGATGCACAGAACGGGGACCTTGGTTATCAAGTTAAATCTACACTGCCAAGTTGTAATCTGGTTTTTCAGGAAGGTGGAGGAGCCAATAGCA GCAAAACTATCAGTGAGGAAATAAAAAAGAAAGAAGAGAACCGTGTGTTTGATCATCTGGAAACTGCGTTGCTAGTTAACCATATAGATGAACCGACAAA CGAGAAGAACATTCATGGTAAGAGTCAGGATACAGCATATGGTGTAAGGCCTTTTGTTCAGGATGTTCACTTCATTGAGGATAAATCCAAGGGAAGCAAC CAAGCAACAGAAAAGGGTAGTGAAAGGCTCCCAATTTACCCTGCATTCAGCATTCCAAGAACTGGTGATAATCAAGCATTTAGCAAATTAGAACCAGAAA ATAGCTTGGGCAAAAGCAGTTATGATGCAGCTAGTGGGTTGCCACCAATTGGTAGCTCGAGGAGCCGCCCACAGCCTATTAGCCGAAGAAATTCCATGTC GGCAGCTGATTTCGAAAGATCTAAGTTAGACTATGAAGTAGGTTGGTTAAGAGAGAGACGAAGAATTGTGAACGAAGGGAGAGAAAAGCTCAACATTCCT ACTGGTTTGAAGGGAAAGGATAAGGTTCAGTTGCAGAATATGGAGAAAATTGTGGGCAAACTTCGAGAGATCCAACAGTTGTCAGAGCCTGGAAATGCTG TTCGTCAGGCGTTGTTAACCCCTCCTCTATCTGGCAGGGTACAGGCTGAAGCAGAAATGAACTGA
AA sequence Show only first row Show all	>Lus10007129 pacid=23139753 polypeptide=Lus10007129 locus=Lus10007129.g ID=Lus10007129.BGIv1.0 annot-version=v1.0 MACQEVESWTFSGLVSAFLDLAIAYLFLSASALAYLASKFLSRIGLSLPCSCNHKSGNCWPRFLLDNPFHSISNVQSSIRRGLPFDLLLDEEEIQEFALG GAAGRLEVERSCNSLPLKNVGAIGVSETNNDNISAGEMLEKKFDMAKNRLKAKCSHRIRRAVEDGTMPEVPPYYSSSSSQPNARIPPLPPPNGSKVVNTV TGCMLPATFCVATPHDDAASSTDHIESTVRGDEVKQTANDVYPSDDSKSKDNANADDERNTLRVLEQALEEERTARLALCQELEQERNAAASAADEAMAM ILRLQEEKASVEMAARQYQRMIDEKSAYDHEEMSILEEMLLKREREKHFLENELEAYKMMIFGNEQLDSGVSDIETMPGNGASFSQYSSEDSSVLWQRIV ETKDAQNGDLGYQVKSTLPSCNLVFQEGGGANSSKTISEEIKKKEENRVFDHLETALLVNHIDEPTNEKNIHGKSQDTAYGVRPFVQDVHFIEDKSKGSN QATEKGSERLPIYPAFSIPRTGDNQAFSKLEPENSLGKSSYDAASGLPPIGSSRSRPQPISRRNSMSAADFERSKLDYEVGWLRERRRIVNEGREKLNIP TGLKGKDKVQLQNMEKIVGKLREIQQLSEPGNAVRQALLTPPLSGRVQAEAEMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	0	1
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10031053 [exp]	1.7	0.8370
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10037943 [exp]	5.3	0.8288
AT1G61900			unknown protein		Lus10020048 [exp]	6.5	0.8204
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	6.6	0.7912
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10036525 [exp]	7.1	0.7940
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	8.1	0.8095
AT1G61900			unknown protein		Lus10006773 [exp]	9.2	0.8039
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	9.2	0.7894
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	10.1	0.7808
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031528 [exp]	13.7	0.8136

Compare expression of checked genes

Lus10007129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.