Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32800 511 / 1e-168 AP4.3A protein kinase family protein (.1) AT3G53810 235 / 1e-66 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 233 / 7e-66 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 228 / 6e-64 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 228 / 7e-64 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59270 225 / 5e-63 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 224 / 7e-63 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 223 / 3e-62 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 223 / 3e-62 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 219 / 6e-61 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016674 [exp] 820 / 0 AT2G32800 966 / 0.0 protein kinase family protein (.1) Lus10016506 [exp] 255 / 7e-74 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 255 / 7e-74 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014037 [exp] 243 / 3e-69 AT1G15530 807 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004710 [exp] 232 / 8e-69 AT3G55550 486 / 7e-169 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 241 / 2e-68 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 236 / 5e-67 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 232 / 2e-65 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10040276 [exp] 228 / 6e-64 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315000 [exp] 578 / 0 AT2G32800 930 / 0.0 protein kinase family protein (.1) Potri.017G055000 [exp] 564 / 0 AT2G32800 559 / 0.0 protein kinase family protein (.1) Potri.009G035701 [exp] 251 / 4e-73 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 244 / 5e-70 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 243 / 2e-69 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 241 / 9e-69 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 238 / 1e-67 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.015G083300 [exp] 237 / 2e-67 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.012G084900 [exp] 236 / 7e-67 AT1G15530 734 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 232 / 1e-65 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10007130 pacid=23139756 polypeptide=Lus10007130 locus=Lus10007130.g ID=Lus10007130.BGIv1.0 annot-version=v1.0 ATGCATCTCAACCGTCTCTGCGTCGTTCTTCCCTCCGACTTCGATGACAAACCGGTTTCCTCCGATCACCATCTCAAGCTAGACCAAACTCCCCGGAGTC GAGGCTGCGGCCATCACATCATTTCCTTAGTCAGCGGGTCGGTCAGACGGTTATACGGCTCCAAATGGGTCACCTCCTGTCATCCGAAGCAGCAGTCAGA AAAGAACAAGTACGCCTCCTCCGGGTCCTTATCCGCTGCGTTTCACGACTCTGAAGGAGTTCAGATAGCTGACGACCGGGTCGGGTACGATAATCCACGG GTCTTCAGCTATTCTGAGCTCTACATCGGCTCCAACGGCTTCAGCGATGCCGAGATTCTCGGGAGTGGGGGTTTCGGCAAGGTTTACAGAGCGGTTCTCC CCAGCGATGGAACTCTGGTCGCCGTTAAATGTTTGTCTGAGAGAGGGGAACAGTTCGATAAGACCTTCGCCGCCGAGTTGGTCGCCGTTGCTCACCTCCG CCACCGGAATCTCGTCCGATTGAGAGGATGGTGCGTGTACGAAGACCAGCTGCTACTGGTCTACGACTACATGCCCAATCGCAGCCTGGATCGCGTCCTT TTCCGGAAATCCGAAAACCTAACCACGGCGTCAGCGGAACCTTCCCCTCGGGTTCTCGATTGGGAGCAGAGGAAGAATATAGTCGCCGGATTGGCGGCGG CGTTGCATTACCTTCACGACCATCTCGAGACCCAAATCATTCACCGCGACGTCAAAGCCAGCAACGTCATGCTGGATTCCAATTACAACGCTAGGCTCGG TGATTTTGGGCTCGCCAGGTGGCTGGAGCACGAATTGGAGTACGGTGTCAGAACTCCGTCGATGAGGGGGAACCACCAATTCCGGGTCACCGAATCCACC CGAATCGGCGGCACGATCGGGTACCTCCCACCCGAGAGTTTCCAGAAAAGAAGCTTCGCTACCGCGAAATCCGACGTTTTCAGCTTCGGAATCGTCCTTC TGGAGGTCGTCTCCGGGAGAAGGGCGGTGGATTTGGCATATCCGGATGATCAGATTGTTCTGCTCGATTGGGTCCGGGAGCTTTCCGACGAGAGGAACGT TCTTCAGGCGGGTGACACCAGGCTTAAAGACGGGTCTTACCGGCTATTCGAAATGGAAAGGATGGTCCATCTGGCTCTCCTCTGTACACTTCACAATCCT CACTACCGTCCCAATATGAAATGGGTAGTGGAAGCAATTTCCGGCGGCCGGAGCTCTGGAGACAAATTGCCGCCGCTTCCTTCTTTCCAGGCTCATCCAC GGTACATATCGATCTCCTCCGGCAGCACCACCACCGCCACCAACACGACAGCCACAACTAGGAGCAGCAGCAGAAGCTCCAAGTCCAGCACCGCAACAAC GACAACAACGGTAATCTCTATTTCAGCGACTTATGCGACTGCTATAGAGGAAACCATTTATGAAACTGCGGAATTTCAGGACAGTTTTGGTGGTGGTGAT GTTGGCAATTATAATTATAGCAACAAAAGTTCTGTGTACGGTAGCAGAAGATGTGGACCTGCTTCCTTCATGGTGGAAACTCCTAGGGAGATATCATTCA AGGAAATAGTAGCTGCCACTAACAACTTCTCGGACTCCAATAGACTAGCAGAAGTTGATTTCGGAACTGCTTACTATGGTGTCCTTGAAGATGGACACCA AGTTCTTGTAAAGAGGCTGGGAATGACTCAGTGCCCTGCATTGAGAACTAGATTCTCCGATGAGCTTCAGAACTTGGGCAGGCTTCGCCACCGCAATCTG ATACAGCTTCGAGGATGGTGTACCGAGCATGGAGAGATGCTTGTCATCTATGATTATTCTCCCAGCCGATTGCTGAGTCACAAACTCTTCCATCACAAGC TAGGCGCCATTCTGCAATGGAGGCATAGGTACAACATCGTCAAGTCACTGGCTTCAGCGGTTCTCTACCTTCATGAAGAGTGGGATGAACAAGTCATCCA CAGGAACATAACGTCCTCTTCTGTAATTCTTGATCCGGACATGATCAACCCGAGGCTAAGCAACTTTGCGCTTGCTGAGTTCCTCCACAGGAATGATCAT GCTCATCAGGAAGCTGCCAAGGGGAACAACAAATCAGTCAGGGGAATCTTCGGCTACATGTCCCCTGAGTACATGGAATCGGGGGAAGCAACTACGATGG CGGATGTTTACAGCTTTGGAGTGGTGGTGCTTGAGGTTGTTAGTGGACAGATGGCCGTTGATTTTCGTAGACCAGAGGTTCTGTTGGTGAATAGAGTGAA TGAATTTGAGGCACATGATAAACCGGTTGAGGAACTGGTTGACGTGAGGTTGGATGGTGAGTATGAGAGTAAAGAAGTGATGAGGCTAGTGAAGTTGGGG AGAGCATGTACGAGGTCCAATCCCGGGTTAAGACCAAGCATGAGGCAGATAGTGAGCATTCTGGATGGGAATGATCAATGGTTATTGGTGGAAGGACAGC AGAAGAAGGAAAGCAGGAAGGAATGGAAGAAGAAGAATGCTTCTTCATTGTCACTGGTGAAGAGAATCCAAGCTCTAGGTATTCAATGA
AA sequence Show only first row Show all	>Lus10007130 pacid=23139756 polypeptide=Lus10007130 locus=Lus10007130.g ID=Lus10007130.BGIv1.0 annot-version=v1.0 MHLNRLCVVLPSDFDDKPVSSDHHLKLDQTPRSRGCGHHIISLVSGSVRRLYGSKWVTSCHPKQQSEKNKYASSGSLSAAFHDSEGVQIADDRVGYDNPR VFSYSELYIGSNGFSDAEILGSGGFGKVYRAVLPSDGTLVAVKCLSERGEQFDKTFAAELVAVAHLRHRNLVRLRGWCVYEDQLLLVYDYMPNRSLDRVL FRKSENLTTASAEPSPRVLDWEQRKNIVAGLAAALHYLHDHLETQIIHRDVKASNVMLDSNYNARLGDFGLARWLEHELEYGVRTPSMRGNHQFRVTEST RIGGTIGYLPPESFQKRSFATAKSDVFSFGIVLLEVVSGRRAVDLAYPDDQIVLLDWVRELSDERNVLQAGDTRLKDGSYRLFEMERMVHLALLCTLHNP HYRPNMKWVVEAISGGRSSGDKLPPLPSFQAHPRYISISSGSTTTATNTTATTRSSSRSSKSSTATTTTTVISISATYATAIEETIYETAEFQDSFGGGD VGNYNYSNKSSVYGSRRCGPASFMVETPREISFKEIVAATNNFSDSNRLAEVDFGTAYYGVLEDGHQVLVKRLGMTQCPALRTRFSDELQNLGRLRHRNL IQLRGWCTEHGEMLVIYDYSPSRLLSHKLFHHKLGAILQWRHRYNIVKSLASAVLYLHEEWDEQVIHRNITSSSVILDPDMINPRLSNFALAEFLHRNDH AHQEAAKGNNKSVRGIFGYMSPEYMESGEATTMADVYSFGVVVLEVVSGQMAVDFRRPEVLLVNRVNEFEAHDKPVEELVDVRLDGEYESKEVMRLVKLG RACTRSNPGLRPSMRQIVSILDGNDQWLLVEGQQKKESRKEWKKKNASSLSLVKRIQALGIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10007130 [exp]	0	1
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	9.6	0.7623
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10033316 [exp]	12.0	0.7740
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10019641 [exp]	28.2	0.7021
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	31.1	0.7346
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	35.1	0.7165
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	38.5	0.7410
AT3G11600			unknown protein		Lus10043404 [exp]	50.6	0.7313
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	56.7	0.7223
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	59.8	0.7333
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	74.5	0.7153

Compare expression of checked genes

Lus10007130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.