Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24110 76 / 1e-17 Calcium-binding EF-hand family protein (.1) AT4G26470 64 / 5e-13 Calcium-binding EF-hand family protein (.1.2) AT3G51920 44 / 3e-06 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT1G50700 44 / 8e-06 CPK33 calcium-dependent protein kinase 33 (.1) AT4G04740 43 / 2e-05 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT4G04695 43 / 3e-05 CPK31 calcium-dependent protein kinase 31 (.1) AT1G61950 42 / 5e-05 CPK19 calcium-dependent protein kinase 19 (.1) AT3G20410 42 / 7e-05 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G21940 42 / 7e-05 CPK15 calcium-dependent protein kinase 15 (.1.2) AT2G41100 41 / 7e-05 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008357 [exp] 59 / 3e-11 AT4G26470 290 / 6e-100 Calcium-binding EF-hand family protein (.1.2) Lus10006777 [exp] 51 / 4e-08 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10020046 [exp] 50 / 1e-07 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10016675 [exp] 159 / 3e-06 AT3G24110 203 / 2e-65 Calcium-binding EF-hand family protein (.1) Lus10002075 [exp] 46 / 3e-06 AT4G04720 536 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021531 [exp] 44 / 2e-05 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10009176 [exp] 42 / 2e-05 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10032640 [exp] 43 / 3e-05 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 43 / 3e-05 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314900 [exp] 129 / 8e-38 AT3G24110 216 / 1e-70 Calcium-binding EF-hand family protein (.1) Potri.001G471100 [exp] 74 / 1e-16 AT4G26470 331 / 3e-116 Calcium-binding EF-hand family protein (.1.2) Potri.004G015500 [exp] 46 / 2e-06 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 45 / 3e-06 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.005G215700 [exp] 43 / 1e-05 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.006G199400 [exp] 42 / 4e-05 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.016G065700 [exp] 41 / 0.0001 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.002G047300 [exp] 40 / 0.0002 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1) Potri.001G257100 [exp] 40 / 0.0002 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.003G134000 [exp] 40 / 0.0002 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007131 pacid=23139754 polypeptide=Lus10007131 locus=Lus10007131.g ID=Lus10007131.BGIv1.0 annot-version=v1.0 ATGTCTACCTACAATCAGATGAAGATGGGAACGGCACCATTGATCTCGAAGAACTCAAGAAATGCATACAGAAACTGGAGCTATAACCCCAAGGACTCTG ACGTCGATGATCTGTTCCATTCCTGTGATTTTGATGGAAGTGGAGGGATTCAGTTCAACGAGTTCATTAGTTCAAGGATGGGTTCACCAGAGAAGGAGGC AACTTTTGACACAGTTGTTGAAGCATTCTTGTTCCTTGACAAGAATGGAGATGGGATGTTGAACAAGAAAGACTTGGTGAATGCTTTGAACGATGCTTCC CCATGGGAGAAATCCCCCTTGGGGATCACCAAGTCCAGATTCAGTGGAGGAAATGGACCGAGACAGAAATGGGAAGGTCAGCTTCAGGGAGTTCTTGTTT GCACTGATCCAATGGGTTGGCATTGA
AA sequence Show only first row Show all	>Lus10007131 pacid=23139754 polypeptide=Lus10007131 locus=Lus10007131.g ID=Lus10007131.BGIv1.0 annot-version=v1.0 MSTYNQMKMGTAPLISKNSRNAYRNWSYNPKDSDVDDLFHSCDFDGSGGIQFNEFISSRMGSPEKEATFDTVVEAFLFLDKNGDGMLNKKDLVNALNDAS PWEKSPLGITKSRFSGGNGPRQKWEGQLQGVLVCTDPMGWH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24110			Calcium-binding EF-hand family...		Lus10007131 [exp]	0	1
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	10.8	0.7150
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	22.4	0.7141
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10022516 [exp]	23.2	0.7007
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041675 [exp]	24.2	0.6505
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10032511 [exp]	27.6	0.6578
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041674 [exp]	27.7	0.6636
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	29.7	0.6747
AT1G61370			S-locus lectin protein kinase ...		Lus10034711 [exp]	41.2	0.6261
AT1G78230			Outer arm dynein light chain 1...		Lus10020932 [exp]	58.0	0.6280
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10029547 [exp]	66.6	0.6296

Compare expression of checked genes

Lus10007131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.