Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30140 44 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007175 [exp] 195 / 5e-61 AT5G27260 67 / 2e-12 unknown protein Lus10037335 [exp] 87 / 6e-20 AT5G27260 69 / 7e-13 unknown protein Lus10025132 [exp] 85 / 9e-20 AT5G28950 55 / 1e-09 unknown protein Lus10035759 [exp] 85 / 5e-19 AT5G27260 74 / 6e-15 unknown protein Lus10006030 [exp] 82 / 7e-18 AT4G17260 124 / 9e-32 Lactate/malate dehydrogenase family protein (.1) Lus10004902 [exp] 75 / 7e-17 ND 36 / 0.002 Lus10012077 [exp] 77 / 3e-16 AT5G27260 50 / 5e-07 unknown protein Lus10032348 [exp] 76 / 1e-15 AT5G27260 52 / 2e-07 unknown protein Lus10022379 [exp] 71 / 5e-14 AT5G27260 74 / 1e-14 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007133 pacid=23139761 polypeptide=Lus10007133 locus=Lus10007133.g ID=Lus10007133.BGIv1.0 annot-version=v1.0 ATGATGGAGGTTAGATCGTCAGGATGTGGTGTTAAAGCTTATCCACATATTAAGTCTAGGCTGAAGCTGATCAAGCAAAAATTCCAGGCGTATCAGCAAT GTAGGGCTCAGAGCGTATCAGCAATGGGTTGGGATGATGTCAACAAGTGCCCTATGGTAGATCCTCAAGTATTTGACAATTTTGCTCAGGCCAATCAAAA CTGCCTGGGTCTAAACGGGGTGCCATTCCCACACTACAAAGACCTGCTAAAGGTTTTTGGGAGGAGTAGTCGTGCTACCGGAGAAGGCGCATCTGGTGTA AATGAAGACTCCAACCTACCGCAAGAACAAGAATTTGCTAGCGTCGACGGTCTAGACCCTAATACTGTCGATGATTCAGACCCAATGGGAAGATTCATGG ACAATATCATCAACGAAGTCCGTGATATGCCCACACCTGTTGGAGCTACAAACCAACAACCTCCTAACTCAGCACTAGAGGCAGATGATATCTCGGATAA TCCACGTCCAAGCCGTGCTGTCGCGCGTCGTATTCAGCTAGAAACCACGATTGCTAACATAACTGCTGAGATCGCTGAGATTCGACCAACAATTGAGAGA GTTGTTGGTTCAATGGTGAATAGGTTGATGGGGGAAGATGTGGATAGCACACAAATGAGGATGTATGATGACACTCGATTTTTCGTGTTCATCATCCTCA TTAAAGCGACATTTCATGCATATTCGTATAGTCTTTGGTAG
AA sequence Show only first row Show all	>Lus10007133 pacid=23139761 polypeptide=Lus10007133 locus=Lus10007133.g ID=Lus10007133.BGIv1.0 annot-version=v1.0 MMEVRSSGCGVKAYPHIKSRLKLIKQKFQAYQQCRAQSVSAMGWDDVNKCPMVDPQVFDNFAQANQNCLGLNGVPFPHYKDLLKVFGRSSRATGEGASGV NEDSNLPQEQEFASVDGLDPNTVDDSDPMGRFMDNIINEVRDMPTPVGATNQQPPNSALEADDISDNPRPSRAVARRIQLETTIANITAEIAEIRPTIER VVGSMVNRLMGEDVDSTQMRMYDDTRFFVFIILIKATFHAYSYSLW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10007133 [exp]	0	1
AT4G21020			Late embryogenesis abundant pr...		Lus10014004 [exp]	2.0	0.8780
AT3G63170			Chalcone-flavanone isomerase f...		Lus10032083 [exp]	7.7	0.8980
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10004471 [exp]	8.1	0.8045
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	13.7	0.8724
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	14.3	0.7789
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	16.2	0.8649
AT1G71140			MATE efflux family protein (.1...		Lus10008911 [exp]	16.3	0.8281
					Lus10011605 [exp]	18.2	0.8649
					Lus10025268 [exp]	19.9	0.8649
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	21.5	0.8649

Compare expression of checked genes

Lus10007133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.