Plant FIBer expression Database

Lus10007135 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04900 515 / 0 Protein of unknown function (DUF185) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016677
[exp]
728 / 0 AT1G04900 574 / 0.0 Protein of unknown function (DUF185) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G314700
[exp]
563 / 0 AT1G04900 682 / 0.0 Protein of unknown function (DUF185) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02636 Methyltransf_28 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence
>Lus10007135 pacid=23139766 polypeptide=Lus10007135 locus=Lus10007135.g ID=Lus10007135.BGIv1.0 annot-version=v1.0
ATGGCGTCTTTTCGTTCCAACAAGCTATCGTGTTTCTTTCACTCCCACAAAGTGGTTTCCCATTCTCCCATAAACCTTTCGTCTGGAGGTCTATTTTCCA
CAAGCATTGTTGGGGATAAGCCAATTCTGGTTAGGGATTTCATACATTCCGCCTTGTATGATCCAAACCATGGCTACTTCTCTCAGAGGTCAAGGTCAGT
TGGAGTATTGGAAAAAAGCATAAAGTTCGAGTGCCTTCAAGGAAGGGAAGCTTATGTGAAGCTAGATAAAGTTTATAAGCAGAGTGATGTGTCATGGTTT
ACTCCAGCAGAGCTCTTCAAGGCGATTATGCGTTCAGCTAACTTTTCAGTCCCACTAAAAATATATGAAATCGGTGGTGGATCAGGAACTTGTGCAAAGG
GCATAATGGATTACATTATGTTGCATGCACCAGCACGAGTGTACAACAATATGACTTATACCTCAGTTGAAATCAGTTCGTCACTGGCTGAAATCCAGAA
GGCAACTGTGGGAGAGGTTCACATGCCAAAATTTAGAGTAGAACGTTGTGATGCTGCTGACCGTAGTGGATGGGGTATGATACTTGTAATTGTTGCTGTT
GATTTATGTAGCATTTTCTTGATAGAAAGTCAGGATTCACCGTGGAAAGAAGTATGGATTCAAAAGCAAGAAAACGGGGAAACTCTGTCTGAGTTGTTCA
AGCCACTACAAGACCAATTGATCAAGCGCTGTGTTGATATCATGGCATCCAACGATGAGTCCGTCTCAATATTGAGAAAAATGTGGTTTAAGCTTTTTCC
AAAACCTCGAAGATGTTGGTTGCCTACTGGCTGCTTGAAACTACTGGAGGTGTTACATGAGGCATTACCAATGATGTCCTTAATTGCTTCTGACTTTAGT
TACCTGCCTGATGTGACCATACCAGGGGTAAGGGCACCTTTGGTCTCAATCAAGAAAGATGGTCAGAGCTTAGACTACAAAAGTTATCTAGACGCGAAGG
GTGATGCTGATATATTTTTCCCAACGGATTTCTGGCTGTTGGAAAGGATGGACCACTACTGTTCTGGTCTGAAACTTAGCAAAGACAAATCATCCAAGCA
AGTAAAGAAAAGACGAACGCTTGCACTTAACACTTCAATGTTCATGGAGGAGTTTGGTTTGCACACGAAGATGAGAACCAAGGATGGATACAACCCATTG
CTGGAGGACTTCACTAATACCAAGTTCTATAATAGTGTTCCGACGCATAACATCATTAAGTAG
AA sequence
>Lus10007135 pacid=23139766 polypeptide=Lus10007135 locus=Lus10007135.g ID=Lus10007135.BGIv1.0 annot-version=v1.0
MASFRSNKLSCFFHSHKVVSHSPINLSSGGLFSTSIVGDKPILVRDFIHSALYDPNHGYFSQRSRSVGVLEKSIKFECLQGREAYVKLDKVYKQSDVSWF
TPAELFKAIMRSANFSVPLKIYEIGGGSGTCAKGIMDYIMLHAPARVYNNMTYTSVEISSSLAEIQKATVGEVHMPKFRVERCDAADRSGWGMILVIVAV
DLCSIFLIESQDSPWKEVWIQKQENGETLSELFKPLQDQLIKRCVDIMASNDESVSILRKMWFKLFPKPRRCWLPTGCLKLLEVLHEALPMMSLIASDFS
YLPDVTIPGVRAPLVSIKKDGQSLDYKSYLDAKGDADIFFPTDFWLLERMDHYCSGLKLSKDKSSKQVKKRRTLALNTSMFMEEFGLHTKMRTKDGYNPL
LEDFTNTKFYNSVPTHNIIK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G04900 Protein of unknown function (D... Lus10007135
[exp]
0 1
AT3G59510 Leucine-rich repeat (LRR) fami... Lus10019356
[exp]
4.1 0.7180
AT2G22530 Alkaline-phosphatase-like fami... Lus10035939
[exp]
6.5 0.7273
AT5G18590 Galactose oxidase/kelch repeat... Lus10043420
[exp]
8.5 0.7483
AT5G01510 RUS5 ROOT UV-B SENSITIVE 5, Protein... Lus10035510
[exp]
8.9 0.7535
AT5G35360 CAC2 acetyl Co-enzyme a carboxylase... Lus10042901
[exp]
9.1 0.7655
AT2G34930 disease resistance family prot... Lus10016337
[exp]
9.5 0.7330
AT4G10180 FUS2, DET1, ATD... FUSCA 2, DE-ETIOLATED 1, light... Lus10042983
[exp]
10.6 0.7340
AT2G04940 scramblase-related (.1) Lus10004532
[exp]
12.5 0.7607
AT3G63510 FMN-linked oxidoreductases sup... Lus10029508
[exp]
17.7 0.7486
AT4G33270 AtCDC20.1, CDC2... cell division cycle 20.1, Tran... Lus10017848
[exp]
17.9 0.7313

Lus10007135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.