Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48760 384 / 5e-138 Ribosomal protein L13 family protein (.1.2) AT4G13170 379 / 4e-136 Ribosomal protein L13 family protein (.1) AT3G07110 379 / 7e-136 Ribosomal protein L13 family protein (.1.2) AT3G24830 378 / 1e-135 Ribosomal protein L13 family protein (.1) AT1G78630 53 / 2e-08 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016679 [exp] 414 / 1e-149 AT5G48760 386 / 9e-139 Ribosomal protein L13 family protein (.1.2) Lus10043151 [exp] 412 / 3e-149 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10032599 [exp] 412 / 3e-149 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10011857 [exp] 392 / 6e-141 AT5G48760 394 / 8e-142 Ribosomal protein L13 family protein (.1.2) Lus10022793 [exp] 389 / 1e-139 AT5G48760 390 / 2e-140 Ribosomal protein L13 family protein (.1.2) Lus10005553 [exp] 46 / 5e-06 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314500 [exp] 390 / 2e-140 AT5G48760 384 / 7e-138 Ribosomal protein L13 family protein (.1.2) Potri.017G054600 [exp] 385 / 1e-138 AT5G48760 351 / 5e-125 Ribosomal protein L13 family protein (.1.2) Potri.002G242600 [exp] 371 / 8e-133 AT4G13170 357 / 4e-127 Ribosomal protein L13 family protein (.1) Potri.001G384600 [exp] 50 / 2e-07 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.011G106100 [exp] 49 / 4e-07 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [flax] [poplar] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Lus10007137 pacid=23139757 polypeptide=Lus10007137 locus=Lus10007137.g ID=Lus10007137.BGIv1.0 annot-version=v1.0 ATGGTGTCCGGATCAGGGATATGCGCCAAGAGGGTGGTCGTCGATGCACGCCACCACATGCTCGGCCGCCTCTCTTCTATCATAGCCAAGGAGCTCTTGA ATGGCCAGAAGGTTGTCGTCGTCCGCTGCGAGGAAATTTGTATGTCCGGCGGACTGGTCCGCCAGAAAATGAAGTATATGAGGTTCCTGAGGAAGCGCAT GAACACCAAGCCTTCTCACGGGCCCATTCATTTCCGCGCCCCTTCCAAGATCCTCTGGCGCACAATCCGTGGCATGATTCCTCACAAGACCAAGCGTGGT GAGGCTGCTCTCGCCAGGTTGAAGGTCTATGATGGTGTCCCCCCGCCCTACGACAAGGTTAAGAGGATGGTTATCCCCGACGCTCTAAAGGTTTTGAGGT TGCAGAGTGGACACAAGTACTGCTTGTTGGGGAAACTCTCATCTGAAGTTGGATGGAACTACTATGATACCATTAAGGAGCTTGAGAGCAGGAGGAAGGA GAAGGCAGCAGTAGTGTACGAGAGAAAGAAGCAGTTGGCTAAACTGAGGGTTAAGGCTGAGAAGACCGCCGATGAGAAGCTTGGTGATCAGCTTGATGTC ATTGCTCCCATCAAATATTGA
AA sequence Show only first row Show all	>Lus10007137 pacid=23139757 polypeptide=Lus10007137 locus=Lus10007137.g ID=Lus10007137.BGIv1.0 annot-version=v1.0 MVSGSGICAKRVVVDARHHMLGRLSSIIAKELLNGQKVVVVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRG EAALARLKVYDGVPPPYDKVKRMVIPDALKVLRLQSGHKYCLLGKLSSEVGWNYYDTIKELESRRKEKAAVVYERKKQLAKLRVKAEKTADEKLGDQLDV IAPIKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	0	1
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	1.4	0.9688
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032918 [exp]	1.7	0.9640
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	2.0	0.9637
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10005586 [exp]	2.0	0.9656
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	3.2	0.9623
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	3.5	0.9621
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10013719 [exp]	4.0	0.9480
AT5G09500			Ribosomal protein S19 family p...		Lus10024865 [exp]	4.2	0.9470
AT5G48760			Ribosomal protein L13 family p...		Lus10016679 [exp]	4.6	0.9536
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	5.5	0.9340

Compare expression of checked genes

Lus10007137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.