Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24140 124 / 2e-34 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 71 / 6e-15 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 60 / 2e-11 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 59 / 2e-10 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 55 / 2e-09 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 45 / 5e-06 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G65320 45 / 1e-05 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 44 / 2e-05 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 42 / 8e-05 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G01460 41 / 0.0001 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027694 [exp] 149 / 1e-45 ND / Lus10025361 [exp] 151 / 5e-44 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10012643 [exp] 139 / 1e-41 ND / Lus10007139 [exp] 135 / 3e-38 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039403 [exp] 129 / 5e-38 ND / Lus10016680 [exp] 134 / 3e-37 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040014 [exp] 120 / 3e-34 ND / Lus10004817 [exp] 116 / 3e-33 ND / Lus10012433 [exp] 113 / 9e-33 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314400 [exp] 127 / 1e-35 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 118 / 6e-32 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 71 / 6e-15 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G202900 [exp] 69 / 1e-14 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 67 / 2e-13 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G031800 [exp] 67 / 2e-13 AT5G53210 303 / 2e-101 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 66 / 3e-13 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G022300 [exp] 64 / 3e-12 AT5G53210 152 / 1e-42 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 63 / 5e-12 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G071100 [exp] 62 / 1e-11 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007138 pacid=23139765 polypeptide=Lus10007138 locus=Lus10007138.g ID=Lus10007138.BGIv1.0 annot-version=v1.0 ATGGCTGAGAACAAATCGTGTCTTGCTGACGTGGAGGTTAAGCTGTTAGGGTTTGATGCAATGATTAAGGTTTTGTCGAGGAGGAGACCTGGTCAGCTGA TTAAGGCCATTGCTGCTTTGGAGGATTTGCAGCTTACAATCCTGCATACCAACATCACTATCATTGAGCAAACTGTGCTTTATTCCTTTAACGTCAAGGC TCATCGTTTCTCACACAGAAAACCGTTTACATCTCAGATAAATGAAGTTAGCCTTTGGAGCATTGAGTTGGTGAATGAGGAGCTATCGAATGTGGACGGT TGTCATTGTGTGATTGAAGAGACACATGGAATCCTTTGTACTTGTAGGCTTGAATCTATGGAGCGCAATTGGGTTAAGGTGAAACCATACCACCTCCACC ACTTTTGGCGATCATTGGAGTACCGTCTCCCTGTAGACAGTGAGAAGTGGGAAGAGCATGACGCGATAGACCGCGACATCCTCAACGGGAATGGTACTGA TGATTTGTGA
AA sequence Show only first row Show all	>Lus10007138 pacid=23139765 polypeptide=Lus10007138 locus=Lus10007138.g ID=Lus10007138.BGIv1.0 annot-version=v1.0 MAENKSCLADVEVKLLGFDAMIKVLSRRRPGQLIKAIAALEDLQLTILHTNITIIEQTVLYSFNVKAHRFSHRKPFTSQINEVSLWSIELVNEELSNVDG CHCVIEETHGILCTCRLESMERNWVKVKPYHLHHFWRSLEYRLPVDSEKWEEHDAIDRDILNGNGTDDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	0	1
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	3.2	0.9823
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10036664 [exp]	3.5	0.9439
					Lus10033149 [exp]	4.5	0.9823
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	5.5	0.9823
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	6.3	0.9823
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	7.1	0.9823
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	7.7	0.9823
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	8.4	0.9823
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	8.9	0.9823
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	9.5	0.9823

Compare expression of checked genes

Lus10007138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.